BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319792
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18410.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1740 0.0
> AT2G18410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone acetylation protein 2 (InterPro:IPR019519); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:7990746-7992774 FORWARD LENGTH=1333
Length=1333
Score = 1740 bits (942), Expect = 0.0
Identities = 1075/1138 (94%), Gaps = 14/1138 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAATCGATTTTCAGAAAGCTAAGAGATGGTGGCGAAGAAGGCGAGCTCGCACCA 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 23 ATGGCGGAATCGATTTTCAGAAAGCTCAGAGATGGTGGCGAAGAAGGCGAACTCGCACCA 82
Query 61 GCTCTCACTATAGAAGAAACTGTAGCTTCCCCTTTTGGAATCGATGTCTCCGGCTACCTT 120
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 83 GCTCTCACTATAGAAGAAACTGTAGCTTCCCCTTTCGGACTCGATGTCTCCGGCTATCTT 142
Query 121 CTCACAAATCTCTCTTCTTCAATTTTAGCTGGAAAATCCAAGTCGCAAGGTCTCGTGTTG 180
||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 143 CTCACAAATCTATCTTCTTCAATTTTAGCTGGAAAATCCTCGTCGCAGGGTCTTGTGTTG 202
Query 181 ATCACATTCTCGCGGAGCCCTTCGTTCTATTTGCAATTGTTGAAGCAAAGAGGAATCGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 203 ATCACATTCTCGCGGAGCCCTTCGTTCTATTTGCAATTGTTGAAGCAAAAAGGAATCGTT 262
Query 241 GTCTCTTCATCTTCTAAATGGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GTCTCTTCATCTTCTAAATGGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGG 322
Query 301 ATTCATGAACCTTCAAGTGGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACACAAGTGT 360
||| || || |||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 ATTGATCAATCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGT 382
Query 361 GTGAGTGACTTGAGAAAGCTTTTTTCTACAGTCATTGAAGCAGGAAGAGAGTTGGTTGGA 420
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 383 GTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGAGTTGGTTGGA 442
Query 421 GAC-GGGAAGACACATTTCTGTGTTGCCATTGATTCGGTGAATGAGCTGCTAAGACATTC 479
|| |||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 443 -ACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCGGTAAATGAGTTGCTAAGACATTC 501
Query 480 ATCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCACGCGCAAATTTCCAG 539
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 502 AGCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCATGCGCAAATTTCCAG 561
Query 540 TGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATA 621
Query 600 TATATCCACGATGAAAGCCAACTTAGAACCTTTGTGTCCATCTTCAGATGGGCAAAGGAA 659
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TATATCCACAATGAAAGCGAACTTAGAACCTTTGTGTCCATCTTCAGATGGGCAAAGGAA 681
Query 660 TGCTTTAGAAAACCTCTTTTTGGTTCATCAGGATTTCGGTAAGGGACGGTTTCATGTCCG 719
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 682 TGCTTTAGAAAACCTCTTTTCGGTTCATCAGGATTTCGGTAAAGGACGGTTTCATGTCCG 741
Query 720 GTTTAAGCTTAGAAAGGGACGTGTAAGAGTAATGTCTGAAGAATATCATGTTGATCAATC 779
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 742 GTTTAAGCTTAGAAAAGGACGTGTGAGAGTAATGTCTGAAGAATATCATGTTGATCAATC 801
Query 780 GGGAATAGTCTTTTCACCCATTTCCTCAACGGATACTGTTATTGTAACCACTAAAAGCCT 839
||| ||| |||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 802 GGGGATAAACTTTTCACCCATTTCCTCTGTGGATACTGTTATTGCAGCCACTAAAAGCCT 861
Query 840 TTTGCCTAAGGCAAGTTATCTAGTTCATTTCAATCTAACGTTGTCTGAGAAAGAACGGGT 899
||||||||||| || | | |||| | | || | |||||||||||||||||||||
Sbjct 862 TTTGCCTAAGG----TT--CAA-TTCAAT-C--TCCA--GTTGTCTGAGAAAGAACGGGT 909
Query 900 CGAGAAGGAAAAAGTTGTGCTTCCTTTTGAGCACCAAGATGATGGAAAATCGAACGAGAT 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CGAGAAAGAAAAAGTTGTGCTTCCTTTTGAGCACCAAGATGATGGAAAATCGAACGAGAT 969
Query 960 CTATGATGGGCGGAGATCTCTTGTGGATGGCAAGATTGAGACAACACCATTGTCTTCAAT 1019
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 970 CTATGATGGGAGGAGATCTCTTGTGGATGGCAAGATTGAGACAACACCATTGTCGTCAAT 1029
Query 1020 GGAGTTGCAGACCGACGTAGTTTCTTCGGGTAAGGGTGGTGAGATTATATATTTCAGAGA 1079
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1030 GGAGTTGCAGACCGATGTGGTTTCGTCGGGTAAGGGTGGTGAGATTATATATTTCAGAGA 1089
Query 1080 TTCAGACGATGAGCATCCTGATTCTGATGAAGATCCTGATGATGATTTGGACATTTAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTCAGACGATGAGCATCCTGATTCTGATGAAGATCCTGATGATGATTTGGACATTTAA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5