BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319808
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18590.1 | Symbols: | Major facilitator superfamily protein... 2119 0.0
> AT2G18590.1 | Symbols: | Major facilitator superfamily protein
| chr2:8069945-8072866 FORWARD LENGTH=1465
Length=1465
Score = 2119 bits (1147), Expect = 0.0
Identities = 1283/1351 (95%), Gaps = 0/1351 (0%)
Strand=Plus/Plus
Query 1 ATGATGCAACGGGCAGATGAAAAACTCATTCCTTCAACTGCGAAAGAATTGAAAGAAGCG 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 110 ATGATGCAACGAGCAGATGAAAAACTCATTCCTTCAACTGCCAAAGAATTGAAAGAAGCG 169
Query 61 TTCCATGCAAAGCTCTCTGATATTGGACTCCTCTCGTTTATAAGAAACATTGTTCAAGGG 120
|||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 170 TTCCATGCAAAGCTGTCCGATATTGGACTCCTTTCGTTTATAAGAAATATTGTTCAAGGA 229
Query 121 CTTGCCTCGCCTTTAGCCGGTTTATTTGCCATCAGTTATGATCGTCCCACAGTTTTCGCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 230 CTTGCCTCGCCTTTAGCCGGTTTATTTGCCATCAGTTATGATCGTCCCACAGTTTTTGCG 289
Query 181 TTCGGAAGTTTCTTTTGGGTCTCATCAACTGTTGCAACTGGAGTCAGCCGCTACTTCATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTCGGAAGTTTCTTTTGGGTCTCATCAACTGTTGCAACTGGAGTCAGCCGCTACTTCATC 349
Query 241 CAGGTAACACTTGGTGTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCAGTGCTT 300
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 350 CAGGTTACCCTTGGTGTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCGGTGCTT 409
Query 301 CAGTCGATAATTGCAGATAGCTTCAAGGAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGG 360
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 CAGTCGATAATCGCGGATAGCTTTAAGGAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGG 469
Query 361 AATCTCATTGGTACGGTTGGAGGTATAGGAGGAACCGTTGTGCCAACAGTCATGGCTGGT 420
||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 470 AATCTGATTGGTACGGTTGGAGGTATAGGCGGAACCGTCGTGCCAACGGTCATGGCTGGT 529
Query 421 CATAATTTCTTTGGAATATCAGGATGGCGATGCGCCTTTATATTGAGTGCCACGCTGAGT 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CATGATTTCTTTGGAATATCAGGATGGCGATGCGCCTTTATATTGAGTGCCACGCTGAGT 589
Query 481 GCGATGGTCGGGATTCTCGTTTTCTTCTTTGTCACTGACCCGAGGGAAAAGAAGACTAGC 540
|||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 590 ACGATTGTCGGGATCCTCGTTTTCTTCTTTGTCAGTGACCCGAGAGAAAAGAAGACTAGC 649
Query 541 AGCGTCATTGTTCATCACGATGATCAACATGAGCGAGATGAAAACAACGGTGCTACAACG 600
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
Sbjct 650 AGCGTCATTGTTCATCACGATGATCAACATGAACGAGATGAAAACAATGGTGGTACAATG 709
Query 601 ATGGAGAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGGAGAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACC 769
Query 661 AAATTAAGAACATTTCAGATCATCGTATTGCAAGGAATCGTCGGTTCGGTGCCATGGAAT 720
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 770 AAGTTAAGAACGTTTCAGATCATCGTATTGCAAGGAATCGTGGGTTCGGTGCCGTGGAAT 829
Query 721 GCAATGGTTTTCTGGACAATGTGGTTCGAACTCATTGGTTTTGATCATAATCAGGCCGCG 780
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 830 GCAATGCTTTTCTGGACAATGTGGTTCGAACTCATTGGTTTTGATCATAATCAGGCGGCT 889
Query 781 CTCCTAAACGGAATATTTGCCACCGGACAAGCAATAGGATCTTTGGTCGGAGGAATAATT 840
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 890 CTCCTCAATGGAATATTTGCCACCGGACAAGCAATAGGATCATTGGTCGGAGGAATAATT 949
Query 841 GCGGACAAAATGTCTCATATGTTTCCAAACTCAGGCAGATTGATTTGTGCACAATTCAGC 900
||||| |||||||||| | ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 950 GCGGATAAAATGTCTCGTGTGTTTCCAAACTCGGGCAGATTGATTTGCGCACAATTCAGC 1009
Query 901 GTTTTCATGGGCGCTATATTCTCCATTGTTCTTCTAAGAATGATCCCACAGTCCATAAAC 960
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| | |||
Sbjct 1010 GTTTTCATGGGAGCTATGTTCTCCATTGTTCTTTTAAGAATGATCCCACAGTCCGTTAAC 1069
Query 961 AGTTACTACATCTTCTTGGTAACTCTCTTTCTAATGGGACTAACCATAACTTGGTGTGGA 1020
|||| ||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 1070 AGTTTCTACATCTTCTTGGTCACTCTCTTTCTTATGGGGCTGACCATAACTTGGTGTGGA 1129
Query 1021 CCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATAGAACCATGGTC 1080
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1130 CCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATCGAACCATGGTC 1189
Query 1081 TATGCATTTGATCGCGCACTCGAAGTTTCTTTTTCGTCATTTGGTGCGCCTTTGGTTGGG 1140
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1190 TATGCATTTGATCGTGCACTCGAAGTGACTTTTTCGTCATTTGGTGCGCCTTTGGTTGGG 1249
Query 1141 ATCATGTCGGAAAAACTTTTCGGGTTTGACGCAAAAGGAATTGATCATGTTAAAGACTCT 1200
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1250 ATCATGTCGGAAAAACTTTTTGGGTTTGACGCAAAAGGAATTGATCATGTTAACGACTCT 1309
Query 1201 GGTCGTGAGGCCGAGGCATTGGGGAAAGGGATCATGTGGATGATGGCCCTCCCGTTTGGA 1260
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1310 GGTCGTGAGGCTGAGGCACTGGGGAAAGGGATCATGTGGATGATGGCTCTCCCGTTTGGA 1369
Query 1261 TTGTGTTGTCTTTGTTACACACCGTTACATTTCCTTTTCCGCAAAGATCGAAAAAACGAT 1320
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 1370 TTGTGTTGTCTTTGTTACACACCGTTGCATTTCCTTTTCCGGAAAGATCGAAAAATCGAT 1429
Query 1321 AGAACTACGAGTTCAACGGAAGTAGAGATGG 1351
|||||||| ||||||| ||||||||||||||
Sbjct 1430 AGAACTACTAGTTCAAGGGAAGTAGAGATGG 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5