BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319811
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18630.1 | Symbols: | Protein of unknown function (DUF677) ... 1814 0.0
> AT2G18630.1 | Symbols: | Protein of unknown function (DUF677)
| chr2:8080503-8082698 FORWARD LENGTH=1777
Length=1777
Score = 1814 bits (982), Expect = 0.0
Identities = 1128/1197 (94%), Gaps = 15/1197 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGAGGAAAATCTAGCAAGAACaaaaaaaaTGTTGAATTTGGTTCACCGTCGACG 60
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 394 ATGATGGGAGGAAAATCTAGCAAGAGCAAAAAGAATGTTGAATTTGGTTCACCGTCAACG 453
Query 61 CCTGTTCAAATCAAGATTAACTCAGAGTACTCAGAGCATTTGAGTTCTTACGAGAGAGCT 120
|| |||||||||||||| |||||||||||| |||||||||| || || ||||| ||||||
Sbjct 454 CCAGTTCAAATCAAGATAAACTCAGAGTACACAGAGCATTTAAGCTCATACGAAAGAGCT 513
Query 121 TGTAGTGAAGATCCAAAGCTTGAATCTTTTGACTCTGCGCTTCATGAACGAACTAACCGA 180
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 514 TGTAGTGAAGATCCAAAGCTTGAATCTTTTGACTCTGCGCTTCACGAAAGAACTAACAGA 573
Query 181 GTCATCAACAAGCTTGCTTCAGGAGTAGAGATTAAGTCTTTGTCGTTTGATTCGCTTAGG 240
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 574 GTCATCAACAAGCTTGCTTCAGGAGTTGAGATCAAGTCTTTGTCGTTTGATTCACTTAGG 633
Query 241 GAAGTGACGCAATGTCTTTTAGATATGAATCAAGATGTGGTTAAAGTTATATTGCAGGAT 300
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 634 GAAGTGACACAATGTCTTTTAGATATGAATCAAGATGTGGTCAAAGTTATATTGCAGGAT 693
Query 301 AAAGAAGATATATGGAACAATCAAGATTTGTTCTCTCTTGTGAATTTGTATTTTGAAAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AAAGAAGATATATGGAACAATCAAGATTTGTTCTCTCTTGTGAATTTGTATTTTGAAAGT 753
Query 361 ACTGCAAAGACTATGGATTTCTGTTCTGAGCTTGAGAATTGTCTTAACCGAGCGAGGAGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 754 ACTGCAAAGACTATGGATTTCTGTTCTGAGCTTGAGAATTGTCTTAACCGCGCGAGGCGG 813
Query 421 AGTCAAGTGATTATTCAGTTTGCTGTTAAGCAGTTTGAGGAAGAGGCGGAGATACCGGTA 480
||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 814 AGTCAAGTGATTATTCAGTTTGCTGTTAACCAGTTTGAGGAAGA----GA-AT----G-- 862
Query 481 AATGGGGATAAGGAGAATAGAAAGTATGAGAAGACGCTTAAGGAGCTTAAGAGGTTTAAA 540
| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 863 -A---GGATAAGGAGAATAGAAAGTATGAGAAGACTCTTGAGGAGCTTAAGAGGTTTAAA 918
Query 541 GTAGCGGGTGAGCCGTTTACGAAAGAGTTCTTTGCTCTTTTCGATTTGGTTTACAAGCAA 600
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 GTAGCTGGTGAACCGTTTACGAAAGAGTTCTTTGCTCTTTTTGATTTGGTTTACAAGCAA 978
Query 601 CAGGTTATGATGCTTGAGGAGCTTCATAAGTTAAAGAAAAAACTCGATAAGAAGCTTAAG 660
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 979 CAGGTTATGATGCTTGAGGAGCTTCATAAGTTAAAGAGAAAACTCGATAAGAGGCTTAGG 1038
Query 661 AATATCAAAACGTGGCGAAGGGTATCGAATATGGTGTTTGTGACTGCGTTTGTCTCTGTG 720
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1039 AATATCAAAACATGGAGAAGGGTGTCGAATATGGTGTTTGTGACTGCGTTTGTCTCTGTG 1098
Query 721 CTTATCTTCTCCGTGGTTGCAGCCGCTGTGGCTGCACCGCCTGTTGTGGCAGCTATAGCT 780
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1099 CTTATCTTCTCGGTGGTTGCAGCCGCTGTGGCTGCACCGCCTGTTGTGGCGGCTATAGCT 1158
Query 781 GGGGCATTGGCTGTTCCAGTGGGTTCTGTTGGGAAATGGTGCAACACGCTGTGGACGAAA 840
|| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1159 GGTGCATTGGCTGTTCCTGTAGGTTCTGTTGGGAAATGGTGCAACACTTTGTGGACGAAG 1218
Query 841 TATGAGAAAGTGGTTAGAGGGCAGAAGGAGATTATTACATCGATTAGGATCGGGACTTAT 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1219 TATGAGAAAGTGGTTAGAGGGCAGAAGGAGATTATTACATCGATTAGAATCGGGACTTAT 1278
Query 901 ATTTCGGTTAAGGAGATGGATAATATAAGTATTCTTGTGCGTAAAGTGGAAGTTGAGATT 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1279 ATCTCGGTTAAGGAGATGGATAATATAAGTATTCTTGTGCGTAAAGTGGAAGTAGAGATT 1338
Query 961 GAATCTTTGCTGAAGAAAGCTGAGTTTGCTATTACGGAAGAGAAAGAAGTGAGGCTTGCG 1020
||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1339 GAATCTTTGTTGAAGAAAGCTGAGTTTGCTATTACTGAGGAGAAAGAAGTGAGGCTTGCT 1398
Query 1021 ATTGATGAGATCAAGAAGAAGCTCGATGTGTTTACTGAAACCATTGAAGAACTTGGGGAA 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 ATAGATGAGATCAAGAAGAAGCTCGATGTGTTTACTGAAACCATTGAAGAACTTGGGGAA 1458
Query 1081 CATGCGGGTAAGTATTGTAGCGATGTGACTAAGGCGAGAACTGTGATTCTGCAGAGGATA 1140
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1459 CATGCGGGTAAGTATTGTAGCGATGTGACAAAGGCGAGAACCGTGATTCTGCAGAGGATA 1518
Query 1141 ATCCGATACCCGGCTAGCTCACCGAAGGATGAAGCTCCTTGGACAGAGATGGTGTAG 1197
||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||
Sbjct 1519 ATCCGATACCCGGCTGGTTCACCGAAGGATGAAGCTCCTTGGACGGAGATGATGTAG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5