BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319814

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18660.1 | Symbols: PNP-A | plant natriuretic peptide A | ch...   593    3e-169


> AT2G18660.1 | Symbols: PNP-A | plant natriuretic peptide A | 
chr2:8090658-8091656 REVERSE LENGTH=779
Length=779

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 366/388 (94%), Gaps = 2/388 (1%)
 Strand=Plus/Plus

Query  1    ATGATAAAAGTGGTAGTAAAATTTGTTGTAATGATGATAGTGTTTGCACAAATCTTAGCT  60
            ||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  13   ATGATAAAAATGGCAGTAAAATTTGTGGTAGTGATGATAGTGTTTGCACAAATCTTAGCT  72

Query  61   CCAATTGCTGAAGCTGCTCTAGGAAAAGCTGTCTATTACGACCCTCCCTACACTAGGTCT  120
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  73   CCAATCGCTGAAGCTGCTCAAGGAAAAGCTGTCTATTACGACCCTCCCTACACTAGGTCT  132

Query  121  GCGTGTTACGGAACACAACGTGAGACGATGGTGGTCGGAGTCAAGAACAATTTGTGGCGA  180
            ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct  133  GCGTGTTACGGAACACAACGTGAGACGCTGGTAGTCGGAGTCAAGAACAATTTGTGGCAA  192

Query  181  AATGGTCAAGCTTGTGGTCGGAGGTACAGGGTTCGATGCATTGGTGCTACGTATAACTTT  240
            ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  193  AATGGTCGAGCTTGTGGTCGGAGGTACAGGGTTCGATGCATTGGTGCTACATACAACTTT  252

Query  241  -CCTGGAGCATGCACTGGTCGTACCGTAGACGTGAAGGTAGTTGATTTCTGCCGGGAGCC  299
              |  |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  253  GAC-AGAGCATGCACCGGGCGTACCGTAGACGTGAAGGTAGTTGATTTCTGCCGGGAGCC  311

Query  300  TTGCAACGGTGACCTTAATCTCTCTCGTGACGCTTTTCGGGTTATCGCTAATATTGATGC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  312  TTGCAACGGTGACCTTAATCTCTCTCGTGACGCTTTTCGGGTTATCGCTAATACTGATGC  371

Query  360  CGGTAACATCCGCGTCGTGTACACACCG  387
            ||||||||| || ||||| |||||||||
Sbjct  372  CGGTAACATTCGTGTCGTATACACACCG  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5