BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319832
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16290.1 | Symbols: | F-box family protein with a domain of... 974 0.0
AT2G16300.1 | Symbols: | F-box family protein | chr2:7061629-7... 972 0.0
AT2G16365.1 | Symbols: | F-box family protein | chr2:7074362-7... 918 0.0
> AT2G16290.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:7058930-7060573 REVERSE
LENGTH=1248
Length=1248
Score = 974 bits (527), Expect = 0.0
Identities = 742/843 (88%), Gaps = 26/843 (3%)
Strand=Plus/Plus
Query 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135
||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 106 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 162
Query 136 ATACCGTTCAATGCCGGCTTTT-CG-T------T--A-C-ACGG-CCAACCTCCGTTTAA 182
||| ||||||||||||| |||| || | | | | |||| ||||||||||||||
Sbjct 163 ATATCGTTCAATGCCGG-TTTTACGTTCAGCGATCAACCAACGGATCAACCTCCGTTTAA 221
Query 183 TAGCGGTGATAAATGCACACTAAAACAGATCTCTGTTTATCTCGTGAGATTCCAGACTCC 242
|| ||| | | |||||||||||| | ||| | ||||||| |||| |||| ||||||
Sbjct 222 AAGTAGTGTTGATTGCACACTAAAAAACATCCCAATTTATCTTGTGAAATTCTGGACTCC 281
Query 243 ATTTGGTGATGATTATCTATTGGCAGAGATGCGTGAGA-GAGAGTTTGAGGAACCCATGT 301
| ||||||||||||| || | |||||||||||||| | ||||| || |||||| | ||
Sbjct 282 GTATGGTGATGATTATTTAATAGCAGAGATGCGTGA-ACGAGAGGGTGGGGAACCGAAGT 340
Query 302 TAATGTTGTCGCCCTTGTCATCTAATGGTATCATATATGGATTTGGAATATATAAAGTGT 361
|| ||||||||||||||||||||||| |||| ||||||||| | |||||| |||||||||
Sbjct 341 TATTGTTGTCGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGT 400
Query 362 TGTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTACT 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 401 TGTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACT 460
Query 422 TCGAGATGCAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAG 481
| ||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 461 TTAAGAAGCAACCCATTCGTTACCGCTATGGATTACCCTATCATTTATGGAATGAAGTAG 520
Query 482 ATTGGGTGGAGACTTCCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAG 541
| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 521 AGTGGGTAGAGACTTCCGAGAGAGTTGAATTTCTTAGACTGCATAGTGAAGATAGCAGAG 580
Query 542 ATTTTGCGGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACA 601
|||||||||||||| ||| |||| ||| | |||||||||||||||||||||||||||||
Sbjct 581 ATTTTGCGGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACA 640
Query 602 TGAGTTGGACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCAT 661
|||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||
Sbjct 641 TGAGTTGGACTCAAGTTGTGGAGCATCCTGAAACGTATGCATATCAAGATTTGGTTGCAT 700
Query 662 TCAAAGGAAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAAC 721
|||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||
Sbjct 701 TCAAAGGAAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGTGTCTTTGTTGTCGAAC 760
Query 722 TTTCTTTG-GAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAA 780
|||||||| || |||||||||||||||||||||| |||||||||| | | ||||||||||
Sbjct 761 TTTCTTTGAGA-GTTACGGAGATCCCCTCAGTCAAAGGATCGCAATATTGTTCTAAAGAA 819
Query 781 AGTCTAGTGCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACC---AGGGTGG 837
||||| |||| || |||||| ||||||||||||||||||||||||| ||| |||| ||
Sbjct 820 AGTCTGGTGCAGTTAGGCGAAGAGTTGTTGCTAGTGCAACGGTTCATACCTGCAGGGCGG 879
Query 838 CGTCATGGTGAatatatatatataCATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAG 897
||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 880 CGTTATGATGAATATATATATA--CATGGTTCAAAGTGTTTAGACTTGATGAAGAAGGAG 937
Query 898 GGA 900
|||
Sbjct 938 GGA 940
> AT2G16300.1 | Symbols: | F-box family protein | chr2:7061629-7063367
REVERSE LENGTH=1330
Length=1330
Score = 972 bits (526), Expect = 0.0
Identities = 736/835 (88%), Gaps = 23/835 (3%)
Strand=Plus/Plus
Query 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135
||||| ||| ||||||||| |||||| | |||||||| ||| |||||||||||||||||
Sbjct 106 CGGTCTGTTGTACCTCCACAAGATCA--A-TCCCGCTGCTTAAGTATCAAAACTCATGAT 162
Query 136 ATACCGTTCAATGCCGGCTTTTCGTTACA-CGGCCAACCTCCGTTTAATAGCGGTG-AT- 192
||| | ||||||||||| |||||||| || ||||||||| || | || | || |
Sbjct 163 ATATCATTCAATGCCGGGTTTTCGTT-CAGCGGCCAACCAACGGATCAT-CCTCTGTTTG 220
Query 193 AAATGCACACTAA-AACAGATCTCTGTTTATCTCGTGAGATTCCAGACTCCATTTGGTGA 251
|| ||||||||| || ||||| | ||||||| |||| |||| |||||| ||||||||
Sbjct 221 GAA-GCACACTAACAA-AGATCCCAATTTATCTAGTGAAATTCTGGACTCCGTTTGGTGA 278
Query 252 TGATTATCTATTGGCAGAGATGCGTGAGA-GAGAGTTTGAGGAACCCATGTTAATGTTGT 310
||||||| ||||||||||||||||||| | ||||| || |||||| ||||| ||||||
Sbjct 279 TGATTATTTATTGGCAGAGATGCGTGA-ACGAGAGGGTGGGGAACCGATGTTTTTGTTGT 337
Query 311 CGCCCTTGTCATCTAATGGTATCATATATGGATTTGGAATATATAAAGTGTTGTTCAACT 370
||||||||||||||||| |||| ||||||||| | |||||| ||||||||||||||||||
Sbjct 338 CGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGTTGTTCAACT 397
Query 371 CTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTACTTC-GAGATG 429
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
Sbjct 398 CTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTAC-TCTGAGAAG 456
Query 430 CAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGATTGGGTG 489
|||| ||||| |||||||||||||||||||| ||||||||||||| | |||| ||||||
Sbjct 457 CAACCCATTCGTTACCGCTATGGATTACCCTGTCATTTATGGGATAAATTAGAGTGGGTG 516
Query 490 GAGACTT-CCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGATTTTGC 548
|||| || |||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 517 GAGA-TTACCGAGAGAGTTGAATTTCTTAAACTGGATAGTGAAGATAGCAGAGATTTTGC 575
Query 549 GGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 608
||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 576 GGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 635
Query 609 GACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATTCAAAGG 668
||||||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||
Sbjct 636 GACTCAAGTTGTGGAGCATCCTGAAAAGTATGCATATCAAGATTTGGTTGCATTCAAAGG 695
Query 669 AAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 728
||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 696 AAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 755
Query 729 GGAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAAGTCTAGT 788
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||| ||
Sbjct 756 GGAAGTTATGGAGATCCCCTCAGTCAGAGGATCACAACAGTCTTCTAAAGAAAATCTGGT 815
Query 789 GCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCAGG-GTG-G-CGTCATGG 845
||||||||||||||||||||||||||||||||||||||| || | ||| | | | |||
Sbjct 816 GCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACCCCTGAAGTGCGGCATTATGA 875
Query 846 TGAatatatatatataCATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGGGA 900
||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 876 TGAATATCTATATA--CATGGTTCAGAGTGTTTAGACTTGATGAAGA-GGAGGGA 927
> AT2G16365.1 | Symbols: | F-box family protein | chr2:7074362-7079519
FORWARD LENGTH=2805
Length=2805
Score = 918 bits (497), Expect = 0.0
Identities = 728/833 (87%), Gaps = 41/833 (5%)
Strand=Plus/Plus
Query 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135
||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1634 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGCTTAGGTATCAAAACTCATGAT 1690
Query 136 ATACCGTTCAATGCCGGCTTTTCGTTAC-ACGGCCAACCTCCGTTTAATAGCGGTGATAA 194
||| ||||||||| |||||||||||| | |||||| ||| || ||| | || |
Sbjct 1691 ATATCGTTCAATGTCGGCTTTTCGTT-CAACGGCCGACCAACG---AAT----G-AAT-A 1740
Query 195 ATGCACACTAAAACAGA-TCTCTGTTTATCTCGTGAGATTCCAGACTCCATTTGGTGATG 253
|||||||||||| ||| || | | |||||||||| |||| |||||| ||||||||||
Sbjct 1741 TTGCACACTAAAAAAGATTC-CAATATATCTCGTGAAATTCTGGACTCCGTTTGGTGATG 1799
Query 254 ATTATCTATTGGCAGAGATGCGTGAGA-GAGAGT-TTGAGGAACCCATGTTAATGTTGTC 311
||||||||||||||||||||||||| | || | | || |||||| | |||| |||||||
Sbjct 1800 ATTATCTATTGGCAGAGATGCGTGA-ACGA-AATGATGGGGAACCGAAGTTATTGTTGTC 1857
Query 312 GCCCTTGTCATCTAATGGTATCATA-TATGGATTTGGAATATATAAAGTGTTGTTCAACT 370
||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||||||
Sbjct 1858 GCCCTTGTCATCTAATGGTATCA-AGTATGGAATGGGAATAAATAAAGTGTTGTTCAACT 1916
Query 371 CTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTAC-TTCGAGATG 429
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
Sbjct 1917 CTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACATT-GAGAAG 1975
Query 430 CAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGATTGGGTG 489
| || || | | ||||||| |||||| ||| | | || | | |||| ||||||
Sbjct 1976 CGACCCAGTGAATACCGCTTTGGATTTCCC--T-A--TA----A---ACTAGAGTGGGTG 2023
Query 490 GAGACTT-CCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGATTTTGC 548
|||| || |||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 2024 GAGA-TTACCGAGAGAGTTGAATTTCTTAAACTGGATAGTGAAGATAGCAGAGATTTTGC 2082
Query 549 GGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 608
||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2083 GGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 2142
Query 609 GACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATTCAAAGG 668
||||||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||
Sbjct 2143 GACTCAAGTTGTGGAGCATCCTGAAAAGTATGCATATCAAGATTTGGTTGCATTCAAAGG 2202
Query 669 AAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 728
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2203 AAAGTTTTATGCTGTTGATTCAAGTGGAAGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 2262
Query 729 GGAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAAGTCTAGT 788
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 2263 CGAAGTTACGGAGATCCCCTCAGTCGGAGGATCGCAACAGTCTTCTAAAGAAAGTCTGGT 2322
Query 789 GCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCAG--GGT-GGCGTCATGG 845
|| ||||||||||||||||||||||||||||||||||||||| | || ||||| |||
Sbjct 2323 GCAGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCTGTTGGGCGGCGTTATGA 2382
Query 846 TGAatatatatatataCATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGG 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2383 TGAATATATATATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAAAGAGG 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5