BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319835

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16310.1 | Symbols:  | pseudogene, RER1-related protein,  bl...   536    8e-152


> AT2G16310.1 | Symbols:  | pseudogene, RER1-related protein,  
blastp match of 58% identity and 2.2e-53 P-value to GP|10945247|dbj|BAB16908.1||AP002863 
putative Rer1A protein (AtRer1A) 
{Oryza sativa (japonica cultivar-group)} | chr2:7065216-7066190 
REVERSE LENGTH=975
Length=975

 Score =  536 bits (290),  Expect = 8e-152
 Identities = 334/356 (94%), Gaps = 0/356 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGGAGTTGGAGGTGACGCTGCTTCAATGGCATCATCACCTGTACAACAACGTGCG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGAGGGAGTTGGAGGTGACGCTGCTTCAATGGCATCATCACCTGTACAACAACGAGCG  60

Query  61   AATGAGGCGTGGAGACTGTATCAGTATTACTTAGACAAGACTACGCCTCACGCGGTTAAT  120
            |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  61   AATGAGGCGTGGAGGCTGTATCAGTATTACTTAGACAAGACTAAGCCTCACGCGGTTAAT  120

Query  121  AGGTGGATCGGGACTCTTGTGATTGCAGTGATATACTGTTTGAGGGTTTTCTATGTTCAA  180
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  121  AGGTGGATCGGGACTCTTGTGATTGTTGTGATATACTGTTTGAGGGTTTTCTATGTTCAA  180

Query  181  GGCTTCTATATCATTTCTTATGCGTTGGGGATTTATGTTCTGAACTTGCTGATTGGGTTT  240
            || |||| |||| |||||| ||| |||||| ||||||||||||||| | ||| |||||||
Sbjct  181  GGGTTCTTTATCGTTTCTTTTGCCTTGGGGCTTTATGTTCTGAACTAGTTGACTGGGTTT  240

Query  241  TTATCGCCACTGGTTGATCCTGAGCTTGATGCGTCTGATGGTCCAATGTTACCCACAAAA  300
            ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct  241  TTATCACCACTTGTTGATCCTGAGCTTGATACGTCTGATGGTCCAATGTTACCCAAAAAA  300

Query  301  GGTTCAGATGAGTTCAAACCATTCATCCGTCGACTTCCAGAGTTCAAGTTCTGGTA  356
            ||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||
Sbjct  301  GGTTCAGATGAGTTCAAGCCATTCATCCGTTGGCTTCCAGAGTTTAAGTTCTGGTA  356


 Score =  200 bits (108),  Expect = 1e-50
 Identities = 166/192 (86%), Gaps = 11/192 (6%)
 Strand=Plus/Plus

Query  353  GGTACTCCATGACTAAGGCTTTCTGCATAGCGTTTGTGATGACATTCTTTTCTTTCTTCG  412
            ||||||  ||||||||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct  638  GGTACTTTATGACTAAGGCGTTCTGCATAGCGTTTGTGATGACATTCTTTTTTTTCTTTG  697

Query  413  ACATCCC-CGTCTTTTGGCCG--A-TACT----A--CTCTTCTATTGGATCGTTCTGTTT  462
            ||||||| | ||||| |||||  | ||||    |  |||||||||||||| | |||||||
Sbjct  698  ACATCCCTC-TCTTTCGGCCGGTACTACTCTTCAGTCTCTTCTATTGGATTGCTCTGTTT  756

Query  463  GTTCTGACAATGAGGCGCCAAATAGCACACATGATGAAGTACAAATATATCCCCTTTAAT  522
            || |||||||||| ||| ||||||| ||||||||| ||||||||||| |||||||| |||
Sbjct  757  GTGCTGACAATGACGCGTCAAATAGAACACATGATTAAGTACAAATACATCCCCTTCAAT  816

Query  523  CTAGGAAAGCAA  534
            ||||||||||||
Sbjct  817  CTAGGAAAGCAA  828


 Score = 75.0 bits (40),  Expect = 7e-13
 Identities = 48/51 (94%), Gaps = 3/51 (6%)
 Strand=Plus/Plus

Query  535  AAATATGGAGGGAAGAAAGCTTCTGGCAGCAG--G-TCTCGCGCAGACTGA  582
            ||||||||||||||||||||||||||||||||  | |||||||||||||||
Sbjct  925  AAATATGGAGGGAAGAAAGCTTCTGGCAGCAGCAGCTCTCGCGCAGACTGA  975



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5