BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319845
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding... 2250 0.0
> AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding;DNA
binding | chr2:7136944-7145222 REVERSE LENGTH=5647
Length=5647
Score = 2250 bits (1218), Expect = 0.0
Identities = 1335/1393 (96%), Gaps = 2/1393 (0%)
Strand=Plus/Plus
Query 1 ATGTTTACGCTACGAGAATGTGTTGAGAAACTGCAACTGTTAAAATCTCCAGAGGAACGG 60
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3343 ATGCTTACGCTGCGAGAATGTGTTGAGAAACTGCAACTGTTAAAATCTCCAGAGGAACGG 3402
Query 61 CAGCGCAGGCTAGAAGAAATTCCAGAAATACATGCTGATCCCAAAATGGATCCAGATTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3403 CAGCGCAGGCTAGAAGAAATTCCAGAAATACATGCTGATCCCAAAATGGATCCAGATTGT 3462
Query 121 GAATCagaagatgaagatgaaaaagaagaaaaggaaaaagagaaaCAACTGAGGCCGCGA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3463 GAATCGGAAGATGAAGATGAAAAAGAAGAAAAGGAAAAAGAGAAACAACTGAGGCCGCGA 3522
Query 181 AGCAGTAGCTTTAACAGAAGAGGAAGAGATCCAATATCTCCACGAAAGGGAGTATTTAGT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 3523 AGCAGTAGCTTTAACAGAAGAGGAAGAGATCCAATATCTCCACGAAAAGGAGGATTTAGT 3582
Query 241 TCCAATGAATCATGGACTGGCACAAGTAACTACTCGAATACAAGTGCAAATCGTGAATTA 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 3583 TCCAATGAATCATGGACTGGCACAAGTAACTACTCAAATACAAGTGCAAATCGTGAGTTA 3642
Query 301 ACCAGAAGTTATTCGGGTAGAGGTTCTACTGGTAGAGGGGATTATCTTGGTAGTTCTGAC 360
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3643 AGCAGAAGTTATTCTGGTAGAGGTTCTACTGGGAGAGGGGATTATCTTGGTAGTTCTGAC 3702
Query 361 GACAAAGTTAGTGAAAGTATGTGGACTTCAGCTAGAGAAAGAGAAGTGCAACCATCTTTA 420
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3703 GACAAGGTTAGTGATAGTATGTGGACTTCAGCTAGAGAAAGAGAAGTGCAACCATCTTTA 3762
Query 421 GGCCCTGAGAAGCCAAGATCTGTTTCAATTCCTGAAACTACTCCCAGAAGTTCTCGTGCT 480
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 3763 GGCTCTGAGAAGCCAAGATCTGTTTCAATTCCTGAAACTCCTGCCAGAAGTTCTCGTGCT 3822
Query 481 GTTGCGCCACCACAATTATCTCCTAGGATTGCCTCTGAAATTTCAACGGCACCTCCTGCT 540
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3823 ATTGCACCACCAGAATTATCTCCTAGGATTGCCTCTGAAATTTCAATGGCACCTCCTGCT 3882
Query 541 GTTGTTCCGCAGCCTGTTCCCAAGGCAAATGAGTCAGAGAAAATATGGCATTACAAGGAC 600
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 3883 GTTGTTTCGCAGCCTGTTCCCAAGTCAAATGATTCAGAGAAAATATGGCATTACAAGGAC 3942
Query 601 CCATCTGGTAAAGTTCAAGGACCTTTTTCGATGGCGCAGCTCCGTAAATGGAACAACACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3943 CCATCTGGTAAAGTTCAAGGACCTTTTTCGATGGCGCAGCTCCGTAAATGGAACAACACT 4002
Query 661 GGGTACTTCCCTGCTAAGTTGGAAATCTGGAAAGCTAAA-GAGTCAGCGTTGGACTCTGT 719
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 4003 GGGTACTTCCCTGCTAAGTTGGAAATCTGGAAAGC-AAATGAGTCACCGTTGGACTCTGT 4061
Query 720 TCTCCTGACTGATGCATTGGCTGGACTATTTCAGAAGCAAACCCAGGCGGTGGATAATAG 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062 TCTACTGACTGATGCATTGGCTGGACTATTTCAGAAGCAAACCCAGGCGGTGGATAATAG 4121
Query 780 CTATACGAAAGCTCAGGTAGCAGCTTATTCTGGTCAATCAAGCCAATCTGAACCCAATTT 839
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4122 CTATATGAAAGCTCAGGTAGCAGCTTTTTCTGGTCAATCAAGCCAATCTGAACCCAATTT 4181
Query 840 AGGTTCTACTGCTAGGACTGCTCCATCAACCATTGAGATTCCTAGGAATTCCCAAGATAC 899
||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4182 AGGTTTTGCTGCTAGGATTGCTCCAACAACCATTGAGATTCCTAGGAATTCCCAAGATAC 4241
Query 900 TTGGAGTCAAGGTGGGAGTCTTCCATCCCCTACTCCAAATCAAATCACTACTCCAACAGC 959
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4242 TTGGAGTCAAGGTGGTAGTCTTCCATCCCCTACTCCAAATCAAATCACAACTCCAACAGC 4301
Query 960 AAAAAGGCGAAATTTTGAGAGCAGATGGTCTCCAACCAAGCCATCTCCACAGTCAGCTAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4302 AAAAAGGCGAAATTTTGAGAGCAGATGGTCTCCAACCAAGCCATCTCCACAGTCAGCTAA 4361
Query 1020 TCAGTCGATGAATTACTCAGTAGCACAATCTGTACAGAGTCAAGCTTCTAGGATAGATAT 1079
||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 4362 TCAGTCGATGAATTATTCAGTAGCACAATCTGGACAGAGTCAAACTTCTAGGATAGATAT 4421
Query 1080 CCCTGTGGTTGTAAATTCTGCTGGTACTCTACAGCCTCAAGCCTACTCTATTCCAACACC 1139
||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 4422 CCCTGTGGTTGTAAATTCTGCTGGTGCTCTACAGCCTCAAACTTACCCTATTCCAACACC 4481
Query 1140 AGATTTGATTAACGTTTCTGTTAATCACTCTGCGACTCTTCATTCTCCAACACCAGCAGG 1199
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4482 AGATCCGATCAACGTTTCTGTTAATCACTCTGCGACTCTTCATTCTCCAACACCAGCAGG 4541
Query 1200 TGGGAAGCAAAGCTGGGGGAGCATGCAGACAGATCATGGAGGAAGTAATGCTCCTTCTTC 1259
||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 4542 TGGAAAGCAAAGCTGGGGGAGCATGCAGACAGATCATGGAGGAAGCAACACTCCCTCTTC 4601
Query 1260 TCAGAATAGCTCTACATCTTATGGCACCCCATCTCCTAGTGTTCTACCCTCACAGAGTCA 1319
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4602 TCAGAATAACTCTACGTCTTATGGCACCCCATCTCCTAGTGTTCTCCCCTCACAGAGTCA 4661
Query 1320 ACCAGGCTTTCCTCCATCTGATACTTGGAAGGTTGCAGTCCCAAGCCAACCAAATGTtca 1379
|||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||| |||
Sbjct 4662 ACCAGGATTTCCTCCATCTGATTCTTGGAAGGTTGCAGTTCCAAGCCAACCGAATGCTCA 4721
Query 1380 ggctcaggctcag 1392
||||||||| |||
Sbjct 4722 GGCTCAGGCCCAG 4734
Score = 900 bits (487), Expect = 0.0
Identities = 574/614 (93%), Gaps = 13/614 (2%)
Strand=Plus/Plus
Query 1411 gctcaggctcaggctcagTGGGGTATGAACATGGTGAACAACAACCAAAACTCAGGACAA 1470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4717 GCTCAGGCTCAGGCCCAGTGGGGTATGAACATGGTGAACAACAACCAAAACTCAGCACAA 4776
Query 1471 CCTCAGGCTCAGGCTCTAGCAAACCAGAACAGCAGCTGGGGTCAAGGGACTGTAAATCCA 1530
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4777 CCTCAGGCT----C-C-AGCAAACCAGAACAGCAGCTGGGGTCAAGGGACTGTAAATCCA 4830
Query 1531 AACATGGGATGGGTTGGTCCTGCTCAAGCTGGAGTGAATGTAAACTGGGGTGGATCTTCT 1590
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 4831 AACATGGGATGGGTTGGTCCTGCTCAAACTGGAGTGAATGTAAATTGGGGTGGATCTTCT 4890
Query 1591 GTTCCCTCAACTGGT-CAGGGAATCCCTAATTCTGGCTGGGGCGGGCCTGTCCAAGGACA 1649
|||||||||||| || || |||||| || |||||||||||| || |||||||||||||||
Sbjct 4891 GTTCCCTCAACT-GTGCAAGGAATCACTCATTCTGGCTGGGTCGCGCCTGTCCAAGGACA 4949
Query 1650 AACACAAGCTTATCCAAACCCAGGGTGGGGCGCAACAGGCCACCCTCAAGCTCAACCCCA 1709
|||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||| |||
Sbjct 4950 AACACAAGCTTATCCAAATCCAGGATGGGGCCCAACAGGCCACCCTCAATCTCAATCCC- 5008
Query 1710 AG-CTCAAGTTCAAGCTCAAGCGGGTACCACAAGCGCGGGATGGATGCAACCAGGTCAAG 1768
|| ||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 5009 AGTCTCAAGTTCAAGCTCAAGCGGGTACTACGGGCTCGGGATGGATGCAACCAGGTCAAG 5068
Query 1769 GGATTCAGTCTGGAAACGGTAATCAAAATTGGGGAACTCAAAATCAGACAGCGATCCCAA 1828
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5069 GGATTCAGTCTGGAAACAGTAATCAAAATTGGGGAACTCAAAATCAGACAGCGATCCCAA 5128
Query 1829 GTGGTGGGTCAGGAGGGAACCAAGCCGGTTACTGGGGAAACCAACAACAGAGCCAGAATG 1888
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5129 GCGGAGGGTCAGGAGGGAACCAAGCCGGTTACTGGGGAAACCAACAACAGAGCCAGAATG 5188
Query 1889 GAGATTCTGGGTATGGTTGGAACAGGCAGTCAAGTGGGCAG-A-A-CAACTTCAAGGGGC 1945
|||||||||||||||||||||||||||||||| |||||||| | | |||||||||||| |
Sbjct 5189 GAGATTCTGGGTATGGTTGGAACAGGCAGTCAGGTGGGCAGCAGAACAACTTCAAGGGAC 5248
Query 1946 AAAGAGTATGCAAGTTCTTCCGCGAAGATGGGTATTGTAGGAAAGGAGCATCCTGCAATT 2005
|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 5249 AAAGAGTATGCAAGTTCTTCCGCGAAAATGGACATTGTCGGAAAGGAGCATCCTGCAATT 5308
Query 2006 ACCTCCACAACTAA 2019
||||||||||||||
Sbjct 5309 ACCTCCACAACTAA 5322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5