BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319846
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding... 1991 0.0
> AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding;DNA
binding | chr2:7136944-7145222 REVERSE LENGTH=5647
Length=5647
Score = 1991 bits (1078), Expect = 0.0
Identities = 1121/1142 (98%), Gaps = 1/1142 (0%)
Strand=Plus/Plus
Query 1 ATGTTTTCATTATGCAAGGGCTGCGCCAAGGATGCTGTCTTCTTTTGCATCAGAGGTAAT 60
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1987 ATGTTTTCATTATGCAAGGGATGTGCCAAGGATGCTGTCTTCTTTTGCATCAGAGGTAAT 2046
Query 61 AAGGGTTTGTGTGAGACATGCATGGAGACAGTCAAGTTGATAGAAAGAAAAGAGCAGGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2047 AAGGGTTTGTGTGAGACATGCATGGAGACAGTCAAGTTGATAGAAAGAAAACAGCAGGAA 2106
Query 121 AAGGAGCCGGCGCAGTTGGATTTTGATGACAAGACCAGCTGGGAATATCTTTTTAAGGAT 180
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2107 AAGGAGCCGGCGCAGTTGGATTTTAATGACAAGACCAGCTGGGAATATCTCTTTAAGGAT 2166
Query 181 TACTGGATTGATTTGAAAACCCAGCTATCTTTAAGTCCAGAGGAACTTGATCAGGCTAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 TACTGGATTGATTTGAAAACCCAGCTATCTTTAAGTCCAGAGGAACTTGATCAGGCTAAG 2226
Query 241 AGGCCACTGAAAGGACATGAGACCAATGCTAGCAAACAGGGAACAGCCAGTGAGACTGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 AGGCCACTGAAAGGACATGAGACCAATGCTAGCAAACAGGGAACAGCCAGTGAGACTGAC 2286
Query 301 TATGTTACTGATGGAGGATCAGATTCAGATAGTTCTCCAAAAAAGAGGAAGACCAGGAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 TATGTTACTGATGGAGGATCAGATTCAGATAGTTCTCCAAAAAAGAGGAAGACCAGGAGT 2346
Query 361 CGATCAAAGTCTGGTTCTGCTGAGAAAATCCTATCACCAGCCGATAAGAATTTGTCAGGT 420
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 2347 CGATCAAAGTCTGGTTCTGCTGAGAAAATCCTATCATCAGGCGATAAGAATTTGTCAGAT 2406
Query 421 GAAACTATGGAGTGGGCTTCCAAGGAACTTTTGGATCTGGTCGTCCACATGAGACGTGGT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2407 GAAACTATGGAGTGGGCTTCCAAGGAACTTTTGGATCTGGTCGTGCACATGAGACGTGGT 2466
Query 481 GACAGATCTTTCTTACCTATGACAGAAGTACAAACTCTCCTACTGGCTTATATAAAAAGA 540
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2467 GACAGATCTTTCTTACCTATGTTAGAAGTACAGACTCTCCTACTGGCTTATATAAAAAGA 2526
Query 541 TACAATCTTCGTGATCCCCGTCGTAAAAGCCAGGTTATCTGCGACTCCAGGCTTCAGAAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 TACAATCTTCGTGATCCCCGTCGTAAAAGCCAGGTTATCTGCGACTCCAGGCTTCAGAAT 2586
Query 601 TTGTTCGGAAAATCACATGTTGGACACTTTGAGATGTTAAATCTCCTTGACTCTCATTTT 660
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2587 TTGTTCGGCAAATCACATGTTGGACACTTTGAGATGTTAAATCTTCTTGACTCTCATTTT 2646
Query 661 CTTAAAAAGGAGCAAAATCAGGCAGATGATATTCAAGGTGACATAGTTGATACAGAAGAA 720
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647 CTGAAAAAAGAGCAAAATCAGGCAGATGATATTCAAGGTGACATAGTTGATACAGAAGAA 2706
Query 721 CCTAATCATGTGGATGTTGATGAAAACTTGGACCATCCAATGAAAAGTGGGAAGGATAAG 780
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2707 CCTAATCATGTGGATGTTGATGAAAACTTGGACCATCCAGTCAAAAGTGGGAAGGATAAG 2766
Query 781 AAACGTAAAACACGCaaaaaaaaTGTCAGGAAAGGACGCCAATCTAATCTTGATGATTTT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2767 AAACGTAAAACACGCAAAAAAAATGTCAGGAAAGGACGTCAATCTAATCTTGATGATTTT 2826
Query 841 GCTGCTGTTGATATGCACAACATTAATTTGATATACTTAAGGCGGAGCTTAGTGGAAGAT 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2827 GCTGCTGTTGATATGCACAACATTAATTTGATATACTTAAGGCGGAGCTTGGTGGAAGAT 2886
Query 901 CTACTTGAAGATTCTACAGCATTCGAAGAAAAAGTTGCTAGTGCATTTGTTAGGTTAAGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 CTACTTGAAGATTCTACAGCATTCGAAGAAAAAGTTGCTAGTGCATTTGTTAGGTTAAGG 2946
Query 961 ATATCTGGAAATCAAAAGCAAGATTTATATCGACTGGTTCAAGTTGTTGGCACAAGCAAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947 ATATCTGGAAATCAAAAGCAAGATTTATATCGACTGGTTCAAGTTGTTGGCACAAGCAAA 3006
Query 1021 GCTCCTGAACCTTATAAAGTTGGCaaaaaaaCAACAGACTATGTACTTGAGATATTGAAC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3007 GCTCCTGAACCTTATAAAGTTGGCAAAAAAACAACAGACTATGTACTTGAGATATTGAAC 3066
Query 1081 TTGGACAAAACGGAAGTGATATCCATTGACATTATATCAAATCAAGATTTCACTGAGG-T 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3067 TTGGACAAAACGGAAGTGATATCCATTGACATTATATCAAATCAAGATTTCACTGAGGAT 3126
Query 1140 GA 1141
||
Sbjct 3127 GA 3128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5