BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319861
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19010.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1604 0.0
AT4G30140.1 | Symbols: CDEF1 | GDSL-like Lipase/Acylhydrolase s... 178 1e-43
> AT2G19010.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr2:8243089-8245378 FORWARD LENGTH=1035
Length=1035
Score = 1604 bits (868), Expect = 0.0
Identities = 980/1035 (95%), Gaps = 4/1035 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAAGTTTGTTGGTTAGTTGCTGCCATCATGTTTGCAGCGGCCACGATGGTTTAC 60
|||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1 ATGTCTAAAGCTTGTTGGTTAGTTGCTGCCATCATATTTACAGCGGCCACGGTGGTTTAC 60
Query 61 GGGCAACAAGAGCCGTGTTTCTTCGTCTTTGGAGACTCCATGTCCGATAATGGAAACAAT 120
|| ||||||| ||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 61 GGACAACAAGCGCCGTGTTTCTTCGTTTTTGGAGACTCAATGTCCGATAATGGCAATAAT 120
Query 121 AATAACTTGAAATCTGAGGCAAAAGTCAACTTTTCACCTTATGGTATTGACTTTCCCCAA 180
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 AATAACTTGAAATCCGAGGCAAAAGTCAACTTTTCACCTTATGGTAATGACTTTCCTAAA 180
Query 181 GGCCCGACCGGCCGTTTTTCCAATGGCCGCACTATCCCCGATATTATCGGTGAACTATCG 240
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 181 GGCCCGACCGGCCGTTTTTCAAATGGCCGCACTATCCCTGATATTATCGGTGAATTATCC 240
Query 241 GGTTTTAAGGATTTCATACCGCCATTCGCCGGAGCATCACCGGAACAAGCTCACACCGGG 300
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 241 GGTTTTAAGGATTTTATACCGCCATTCGCCGAAGCATCACCTGAACAAGCTCACACCGGG 300
Query 301 ATGAACTACGCTTCCGGTGGAAGTGGACTTCGTGAAGAAACAAGCGAACACTTGGGAGAT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGAACTACGCTTCCGGTGGAAGTGGACTTCGTGAAGAAACTAGCGAACACTTGGGAGAT 360
Query 361 AGAATCAGTATAAGAAAGCAACTACAAAATCACAAGACAG-CGATAACGAAAGCGAATGT 419
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 361 AGAATCAGTATAAGAAAGCAACTACAAAATCACAAGAC-GTCCATAACGAAAGCGAATGT 419
Query 420 TCCAGCAGAAAGACTGCAACAATGTCTCTACACAATCAACATCGGAAGCAACGATTACAT 479
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 420 ACCAGCAGAAAGATTGCAACAATGTCTCTACATGATCAACATTGGAAGCAACGATTACAT 479
Query 480 CAACAATTACTTCATGTCAAAACCGTACAACACTAAACGACGCTACACTCCTAAACAATA 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAACAATTACTTCATGTCAAAGCCGTACAACACTAAACGACGCTACACTCCTAAACAATA 539
Query 540 CGCATATTCTCTCATTATTATTTACCGTTCTCACTTAAAGAATTTGTACCGACTAGGAGC 599
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 540 CGCATATTCTCTCATTATTATTTACCGTTCCCACTTAAAGAATTTGCACCGTCTAGGAGC 599
Query 600 GAGGAAGGTGGCAGTTTTCGGACTCAGTCAAATTGGGTGCACACCAAAGATAATGAAGTC 659
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 600 GAGGAAGGTGGCAGTTTTCGGACTCAGCCAGATTGGGTGCACACCAAAGATAATGAAGTC 659
Query 660 ACACAGTGACGGTAAAATATGTTCCCGCGAAGTGAACGAGGCAGTGAAGATTTTTAATAA 719
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 660 ACACAGTGACGGTAAAATCTGTTCCCGCGAAGTGAATGAAGCAGTGAAGATTTTTAATAA 719
Query 720 GAACCTTGACGACCTTGTCATGGATTTCAATAAGAAGGTCAGAGGTGCAAAGTTTACCTT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAACCTTGACGACCTTGTCATGGATTTCAATAAGAAGGTCAGAGGTGCAAAGTTTACCTA 779
Query 780 TGTCGATCTTTTCTCTGGTGGAGATCCCCTAGCCTTCAAATTTC-TAGGATTTAAGGTTG 838
|||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 780 CGTCGATCTTTTCTCCGGTGGAGATCCCCAAGCCTTCAT-TTTCCTAGGATTTAAGGTTG 838
Query 839 GAGACAAGAGTTGTTGCACAGTAAACCCGGGGGAAGAACTTTGTGTCCCAAACCAGCCGG 898
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGGTAAGAGTTGTTGCACAGTAAACCCGGGGGAAGAACTTTGTGTCCCAAACCAGCCGG 898
Query 899 TTTGTGCAAACAGAACTGAATATGTCTTTTGGGATGATCTTCACAGCTCGGAAGCCACCA 958
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 899 TTTGTGCAAACAGGACTGAATATGTCTTTTGGGATGATCTTCACAGCACGGAAGCCACTA 958
Query 959 ATATGGTAGTGGCCAAGGGCTCGTTCGACGGAATCATAACTAAACCGTATAGCATCGCCC 1018
||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 959 ATATGGTAGTGGCGAAGGGCTCGTTCGACGGAATCATAAGTAAACCGTATAGTATCGCCC 1018
Query 1019 AGCTTGTGAAGGAAT 1033
|||||| ||||||||
Sbjct 1019 AGCTTGCGAAGGAAT 1033
> AT4G30140.1 | Symbols: CDEF1 | GDSL-like Lipase/Acylhydrolase
superfamily protein | chr4:14738387-14740676 REVERSE LENGTH=1391
Length=1391
Score = 178 bits (96), Expect = 1e-43
Identities = 330/440 (75%), Gaps = 28/440 (6%)
Strand=Plus/Plus
Query 72 GCCGTGTTTCTTCGTCTTTGGAGACTCCATGTC--CGATAATGGAAACAATAATAACTTG 129
|||||||| |||||| |||||||||| | |||| ||| || || ||||| ||| ||||
Sbjct 221 GCCGTGTTACTTCGTGTTTGGAGACT-C-TGTCTTCGACAACGGTAACAACAATGCCTTG 278
Query 130 AA-ATCTGAGGCAAAAGTCAACT-TTTCACCTTATGGTATTGACTTTC-CCCAAGGCCCG 186
|| | | |||| || ||||||| ||| |||||||||||| || || | ||||| ||
Sbjct 279 AACA-CCAAGGCCAAGGTCAACTATTT-ACCTTATGGTATAGA-TTACTTTCAAGGTCCA 335
Query 187 ACCGGCCGTTTTTCCAATGGCCGCACTATCCCCGATATTATCGGTGAACTATCGGGTTTT 246
||||| || ||| ||| || || | ||| || || |||||| ||||||| |||||||
Sbjct 336 ACCGGTCGGTTTAGCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTC 395
Query 247 AAGGATTTC-ATACCGCCATTCGCCGGAGCATCACCGGAACAAGCTCACACCGGGA-TGA 304
|| | | || || ||||| ||||||||||||| || ||||||| ||| | ||| | |
Sbjct 396 AA-TAACCCAATTCCACCATTTGCCGGAGCATCACAGGCACAAGCTAACATC-GGACTCA 453
Query 305 ACTACGCTTCCGGTGGAAGTGG-ACTTCGTGAAGAAACAAGCGAACACT-TGGGAGATAG 362
|||| |||||||||| | || | | || |||||||| |||||| | | |||| || ||
Sbjct 454 ACTATGCTTCCGGTGCCGGCGGTA-TCCGCGAAGAAACCAGCGAA-AATATGGGTGAGAG 511
Query 363 AATCAGTATAAGAAAGCAACTACAA-AATCACAAGACAGCGATAACGAA-AGCGAATGTT 420
||||||| | ||| ||||| || || || ||| | || || | || ||| ||
Sbjct 512 AATCAGTTTGAGACAGCAAGTA-AACAACCACTTTTCCGCTATCA-TAACCGCGGCGGTG 569
Query 421 CCAGCAGAAAGACTG-CAA--CAATGTCTCTACACAATCAACATCGGAAGCAACGATTAC 477
||| | | || | | || |||||||| ||||||||||||||||||||||||||||||
Sbjct 570 CCA-CTG--AGTCGGTTAAGGCAATGTCTATACACAATCAACATCGGAAGCAACGATTAC 626
Query 478 ATCAACAATTACTTCATGTC 497
||||||| |||||| ||||
Sbjct 627 CTCAACAACTACTTCTTGTC 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5