BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319874
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18850.1 | Symbols: | SET domain-containing protein | chr2:... 2591 0.0
> AT2G18850.1 | Symbols: | SET domain-containing protein | chr2:8160734-8163689
FORWARD LENGTH=1896
Length=1896
Score = 2591 bits (1403), Expect = 0.0
Identities = 1555/1629 (95%), Gaps = 7/1629 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGAGACTGGTGATTTATGTCTAGAACTTCCCAAAGATGATCCCTTTTATCACCAT 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 76 ATGTCAGAGACTGGTGATTTATGTGTAGAACTTCCCAAAGATGATCCCTTTTATCACCAC 135
Query 61 AAAAAGAAGTTCTTGAGTTGCAAAGGTGTAGGCGTAAAGGAAACATTGAACCTCAGTGGA 120
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 136 AAAAAGAAGTTCTTGAGTTGCAAAGGTTTATGCGTAAAGGAAACATTGAACCTCAGTGGA 195
Query 121 TCATTATCTCAACAGCTTTTGTATGCTGCATTGGAAAAGTTGCTTCAGTTTGGACGAATA 180
|||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 196 TCATTATCTCAACAACTGTTGAATGCTGCATTGGAAAAGTTGCTTCATTTTGGACGAATA 255
Query 181 GTTAACCTCGATAAGGTGGAAGTTTACTTTGGTGAGGATGCTTTTACTCCAGCAGGAATT 240
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 256 GTTAATCTCGATAAGGTGGAAGTTTACTTTGGTGAGGATGCTTGCACTCCTGCAGGAATT 315
Query 241 TACAGTGTTAGAAACGAAATCTCAGCTCTCAGCTGGATCCTTTCGCTCATACCGGTTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 316 TACAGTGTTAGAAACGAAATCTCAGCTCTCAGCTGGATCCTTTCGCTTATACCGGTTTCT 375
Query 301 TGTGAA-ATGCAAACACAAGTCGATACCTTGGAAGCTCTACGAGCTGCTGTAAAAAGTAG 359
||| || |||||||||||||| |||||||| |||||||||||||||||| ||||| ||||
Sbjct 376 TGT-AAGATGCAAACACAAGTTGATACCTTTGAAGCTCTACGAGCTGCTTTAAAAGGTAG 434
Query 360 AATCAGTGAGGTTGTTGGAGCGGAAACGGAGAGAGCTAGAGTTTTTGATAGCTATAGATG 419
||||| ||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||
Sbjct 435 AATCAATGAGGTTGTTGGAGCTGAAAAGGAGAAAGCTAGAGTTGTTGATAGCTATAGATG 494
Query 420 TGAAAAGGAAAGCAGATTAGTAGAATGGGGTCAGGACAATGGAGTCAAAACCAAATTGCA 479
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CGAAAAGGAAAGCAAATTAGTAGAATGGGGTCAGGACAATGGAGTCAAAACCAAATTGCA 554
Query 480 GATAACTCAAATTGATGGCTATGGACGAGGAGCTGTAGCTAGCGAAGACTTGAAATTTGG 539
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 555 GATAGCTCAAATTGATGGCTATGGACGAGGAGCTATAGCTAGCGAAGACTTGAAATTTGG 614
Query 540 CGATGTTGCTCTAGAGATTCCAATCTCAAGTATCATTTCTGAGGAGTATGTGTACAACTC 599
|||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 615 CGATGTTGCTTTAGAGATTCCAGTCTCAAGTATCATTTCGGAGGAGTATGTGTACAACTC 674
Query 600 CGACATGTACCCAATATTGGAGAAGATTGATGGGATTACATCTGAGACAATGGTGCTATT 659
||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||| ||
Sbjct 675 CGACATGTACCCAATATTGGAGACGTTTGATGGCATTACATCTGAGACAATGCTGCTCTT 734
Query 660 ATGGACCATGAGGGAGAAGCATAACCCGGACTCGAAATTCAAACCATACTTTGACTCTCT 719
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 735 ATGGACCATGAGGGAAAAGCATAACCTGGACTCGAAATTCAAACCATACTTTGACTCTCT 794
Query 720 GCAGGAGAATTTTTGTACTGGTTTGAGTTTCGGGGTTAATGCAATCATGGAGCTTGATGG 779
||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 795 GCAAGAGAATTTTTGTACCGGTTTGAGTTTTGGGGTTGATGCAATCATGGAGCTTGATGG 854
Query 780 TACATTGCTTTTAGATGAAATAATGCAAGCTAAAGAACTTTTGCGTGAGAGGTATGATGA 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 TACATTGCTTTTAGATGAAATAATGCAAGCTAAAGAGCTTTTGCGTGAGAGGTATGATGA 914
Query 840 ATTGATTCCTCTTTTATCGAACCACCGGCATGTATTTCCACCGGAGCTCTATACATGGGA 899
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 915 ATTGATTCCTCTTTTATCGAACCACCGGGAAGTATTTCCACCGGAGCTCTATACATGGGA 974
Query 900 ACATTACTTATGGGCTTGCGAGTTGTATTACTCAAATAGCATGCAAATCAAATTCCCTGA 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 975 ACATTACTTATGGGCTTGTGAGTTGTATTACTCAAATAGCATGCAAATCAAATTCCCAGA 1034
Query 960 TGGAAAGCTGAAGACTTGCTTGATTCCTGTCGCCGGTTTTCTCAACCATTCGATATACCC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1035 TGGAAAGCTGAAGACTTGCTTGATTCCTGTCGCCGGTTTTCTCAACCATTCTATATACCC 1094
Query 1020 ACACATAGTGAAATATGGAAAAGTATG-CGTTGAGACGAGTTCCTTGAAGTTCCCAGTCT 1078
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1095 ACACATAGTGAAATATGGAAAAGTA-GACATTGAGACGAGTTCCTTGAAGTTCCCAGTCT 1153
Query 1079 CAAGGCCTTGCAACAAAGGGGAACAATGTTTTCTTAGCTACGGAAACTACTCTAGTTCGC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CAAGGCCTTGCAACAAAGGGGAACAATGTTTTCTTAGCTACGGAAACTACTCTAGTTCGC 1213
Query 1139 ATCTGTTAACATTTTACGGATTTCTACCAAAAGGCGATAATCCGTATGATGTCATTCCCT 1198
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1214 ATCTGTTAACATTTTACGGATTTCTACCAAAAGGGGATAACCCGTATGATGTCATTCCCT 1273
Query 1199 TAGATTTTGATGTCATTGATGATGAAGACA-CTGAGACTGAGTTTTCTTGGACAACTCAC 1257
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1274 TAGATTTTGATGTCATTGATGATGAAGACATC-GAGACCGAGTTTTCTTGGACAACTCAC 1332
Query 1258 ATGGTACACGGGACTTGGCTATCGAGCAATCACAACATCTTCCACTACGGCTTTCCTACT 1317
||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1333 ATGTTACGCGGGACTTGGCTATCGAGTAATCACAACATCTTCCACTACGGCTTGCCTACT 1392
Query 1318 CCATTGTTGAACTACTTGCGCAAAGCTCATGGACTTGATCATCATTCTGAAACAGATTTA 1377
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1393 CCATTGTTGAACTACTTGCGCAAAGCTCATGGTCTTGTTCATCATTCTGAAACAGATTTA 1452
Query 1378 TGGAAGAACTTGGAAGTTGAGATGGGAGTACTCGAGAATCTCCAATCCACATTCGACAAC 1437
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1453 TGGAAGAACTTGGAAGTTGAGATAGGAGTACTTGAGAATCTCCAATCCACATTCGACGAC 1512
Query 1438 ATGATGCAAAATCTTGGCGATGCGGATTCTATCGACAGAGAAAACGCGGATTGGGATGTT 1497
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1513 ATGATGCAAAATCTTGGCGATGCAGATTCTATCGACAGAGAAAACGCGGATTGGGATGTT 1572
Query 1498 AAAATAGCGATGGAGTTCAAAGAGCAGCAGAGAAAGATTGTGTCTTCCATTCTTGATTCA 1557
||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 1573 AAACTAGCGATGGAGTTCAAAGAGCGGCAGAGAAAGATTGTCTCATCCATTCTTGATTCA 1632
Query 1558 TGTTCTGCAGGTATCAAACTAGTTCAAGAATTCATAACTAACCCACCGGTTTTAGCCAAG 1617
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1633 TGTTCTGCAGGTATCAAACTAGTTCAAGAATCCATAACTAACCCACCGGTTT-AGCTAAG 1691
Query 1618 CTAGAATGA 1626
||||||||
Sbjct 1692 GTAGAATGA 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5