BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319882
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20310.1 | Symbols: RIN13 | RPM1 interacting protein 13 | ch... 1319 0.0
> AT2G20310.1 | Symbols: RIN13 | RPM1 interacting protein 13 |
chr2:8761180-8763152 REVERSE LENGTH=1510
Length=1510
Score = 1319 bits (714), Expect = 0.0
Identities = 925/1025 (90%), Gaps = 21/1025 (2%)
Strand=Plus/Plus
Query 321 tgatgatgatgatgatgatgatgTGCTTGTAGTGGGTCAAAAGGGTGAGATAGCATGTAG 380
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGACGACGACGATGATGATGATGTGCTTGTAGTGGGTCAAAAGGGTGAGATAGCATGTAG 410
Query 381 AGATTTCCCACATCCTCGACATTCGTGTGCTAAGTATGCGTTTAACTCAACATCACACGA 440
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 411 AGATTTCCCTCATCCGCGACATTCGTGTGCTAAGTATGCGTTCAACTCAACATCACATGA 470
Query 441 GAAGTACTGTGACATGTGTCACTGTTATGTGTGTGACATCCGTGCTCCATGTCCATACTG 500
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 471 GAAGTACTGTGACATGTGTCATTGTTATGTGTGTGACATCCGTGCTCCGTGTCCATACTG 530
Query 501 GTGTATTGCTGTCTCCAGCATAGATCATTGTCATGCTAATGATAAAGAGAAGATATGGAA 560
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTGTATCGCTGTCTCCTCCATAGATCATTGTCATGCTAATGATAAAGAGAAGATATGGAA 590
Query 561 GAATCAACGTGAATACTTCAGGACGGGATACATGCCTACCCCACCGA-CTTCGAAACCTA 619
|||||||||||||||||||||||| ||||||||||||||| |||| | |||| |||||||
Sbjct 591 GAATCAACGTGAATACTTCAGGACAGGATACATGCCTACCGCACC-ATCTTCAAAACCTA 649
Query 620 CTCCAAGTATCTTACGGGTGTCTAAAAACACTTTGCTTCGGAAC--CCG-GTTGAGATCC 676
|||||||||| |||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 650 CTCCAAGTATTTTACGGGTACCCAAAAACACTTTGCTTCGGAAAAACCATGTTGAGATCC 709
Query 677 GGCGTTGTTCATCATCTACCCGTGTTGCTAATCCCTCAAGCGTCAAAGCCAGGCATAGAA 736
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 710 GGCCTTGTTCATCATCTACCCGTGTTGCTAATCCTTCAAGTGTCAAAGCCAGGCATAGAA 769
Query 737 TCAGGCAACCGATCCCTCACAATCAAGGGTTGCAGAGTCAACCTGCGCAGTCATTGAGCG 796
||||||||||||| || |||||||||||||||||||||||||| || |||||||| |||
Sbjct 770 TCAGGCAACCGATTCCGCACAATCAAGGGTTGCAGAGTCAACCGGCACAGTCATTAAGCA 829
Query 797 GTGTTCGCAACAGCGTGATCCAAAAGGATAGAAGCTCTTATAAGTTTAGCCTACGATCCC 856
||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 830 CTGTTCGCGACAGCGTGATCCAAAAGGATAGAAGTTCTTATAGGTTTAGCCTACGATCCC 889
Query 857 GAGTAGCCTCTTCTGCGGGAAATGGTAACAACATCCGATATAGCAATGCTCAAGTTTCAC 916
||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||
Sbjct 890 GAGTAGCCTCTTCTGCGGGAAATGGTATCAGCATCCGATTTAACAATGCTCAAGTTTCAC 949
Query 917 AATCCAGCCACCATAGCTCTTCCTTAGTGGCACCGACAAAAAACCCGGAAATGTACACTC 976
||||||| ||||||||||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct 950 AATCCAGTCACCATAGCTCTTCCACAGTGGCACCTACATTAAACCCGGAAACGTACACTC 1009
Query 977 AACAACGCAATTACCAGCCCAATGTTAGTGATCATTGCACAGCGCTACCTGGTTCACAGA 1036
||||||||||| | | | |||||||||||||||||||||||||||| ||||
Sbjct 1010 AACAACGCAAT-----G-----T-TC-GTGATCATTGCACAGCGCTACCTGGTTCTCAGA 1057
Query 1037 GCAATATGTACACTCGACA-GTCAGACCAGAACATACGTGGTAGTGGAAATCGTCAGTTT 1095
|||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1058 GCAACGTGTTCACTCGACATG-CAGACCAGAACATACGTGGTAGTGGAAATCGTCAGTTT 1116
Query 1096 CAGACACATGTGAATCTGTTTGCTCCGTCGGAAGCTCCTCTTACTGCTGCAGATCCACAA 1155
|||||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | ||
Sbjct 1117 CAGACAAATGTGGATCGGTTTGCTCCGTCCAAAGCTCCTCTTACTGCTGAAGATTCGCAT 1176
Query 1156 ACAGAGACGGTACAACAGCAACTAGGGACAAATGAAAACGTCTTGGAGACCAAACTATCG 1215
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1177 ACAGCTACGGTACAACAGCAACCAGGGATTAATGAAAACGTCTTGGAGACCAAACTATCG 1236
Query 1216 GAATTTGAGAACTGGCTAATGGAAAATCCTAACCAAACCGGCGCGGTTAGTCCGTTGCCC 1275
||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||
Sbjct 1237 GAATTTGAGAAATGGCTAATGGAAAATCCTAACCCAACCGGCCCTGTTAGTCCGTTACCT 1296
Query 1276 GAACCGGTAGGTGAAGACTATGTT-GATACGTTGTTATTTGATTTCGAAACCTTCTTGAA 1334
||||||| | | ||||||||| | | |||||||| ||||||||| ||||| || |||||
Sbjct 1297 GAACCGGGAAATCAAGACTATGCTAG-TACGTTGTCATTTGATTTTGAAACATTTTTGAA 1355
Query 1335 TGATT 1339
|||||
Sbjct 1356 TGATT 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5