BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319889 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superf... 654 0.0 AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 411 1e-113 AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 87.9 2e-16 AT4G33900.1 | Symbols: | Galactose oxidase/kelch repeat superf... 65.8 9e-10 > AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:8794818-8795980 REVERSE LENGTH=1047 Length=1047 Score = 654 bits (354), Expect = 0.0 Identities = 554/645 (86%), Gaps = 36/645 (6%) Strand=Plus/Plus Query 466 GATTCTTTGAAAC-GTGTTGAAGTGTACAACATAGAGACTCAAACTTGGATTCCTGTGCC 524 |||||| || ||| |||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 421 GATTCTCTG-AACTGTGTTGAAGTGTACAACACAGACACTCAAACTTGGATTCCTGTGCC 479 Query 525 GCCCAACAAACGGAGAGTCAAACT-CATACATATGAAAGGAAAGCTTTACATGAACGTTG 583 |||||||||||||| | ||||||| || |||||||||||||| |||||||||||| ||| Sbjct 480 GCCCAACAAACGGATATTCAAACTCCA-ACATATGAAAGGAATGCTTTACATGAAAGTTA 538 Query 584 GTAAACTTTTGA-----G-T---C---TTGCTGAGAAGGTTTTGCCTTTAAACCCAAAGG 631 |||||||||||| | | | ||||||| || || ||||||| || ||| Sbjct 539 GTAAACTTTTGAGCTTTGTTGCACAGGATGCTGAGGAGCTTGCGCCTTTATTTCCGAAGC 598 Query 632 TTCGATCATTGGAAATAATGTCTCCTAGGGATGTTATGGCTTTTAAGCCTGAGGTTTGTG 691 |||| ||| | || | | | ||| ||| ||| ||||||||||||| |||||| | Sbjct 599 TTCGGTCA-T-----TACT-T-T-CTACGGAGGTTGTGGCTTTTAAGCCAAAGGTTT-CG 648 Query 692 G--GGCATTTGAAGCGTTAGGATTGGATACGGTCAATACAGATTTAAATCGAGGTTCTTT 749 | || || ||||| ||||||||| | ||||||||||||||||| |||||||||||| Sbjct 649 GAAGG-ATATGAAGTGTTAGGATT---TTCGGTCAATACAGATTTAGGTCGAGGTTCTTT 704 Query 750 TTGTATGATAGAGGAGATGACCTATCATTATGACCCTAGTGTAAAGTTTAGATGGAGAAA 809 ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 705 TTGCATGATAGAGGAGATTACCTATCATTATGACCCCAGTGTAAAGTTTAGATGGAGAAG 764 Query 810 AAGTA-TGGGAGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGGCTACCTAAGTTTGCTA 868 ||| | |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| Sbjct 765 AAG-ACAGGGAGGAGTTTGGAGATCATTAGTGGGATTAGAAGGGCTACCTAAGTTTGCTA 823 Query 869 GATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGGACAAGT 928 ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 824 GATATAGTAGTGTTAAGTTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGCACAAGT 883 Query 929 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGCAGAAATTTCGCTTGAAA 988 |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 884 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGGTTTGGTGCGCAGAAATTTCCCTTGAAA 943 Query 989 GGCGCAACAAAGAA-GAGATTTTGGGGAAGGTCGAGTGGTTCGATGCAGTTCTTACAGTC 1047 ||||| ||| ||| ||||||| ||||||| |||||||||||||||||||||||| |||| Sbjct 944 AGCGCAGCAA-GAAAGAGATTTGGGGGAAGATCGAGTGGTTCGATGCAGTTCTTAGAGTC 1002 Query 1048 CCTAAGTCTTACAAATTTGTTGATGCTAAATCTGCTACTGTTTGA 1092 ||||||| |||| |||| |||| ||||||||||||||||||||| Sbjct 1003 CCTAAGTATTACCAATTCGTTGGGGCTAAATCTGCTACTGTTTGA 1047 Score = 470 bits (254), Expect = 2e-131 Identities = 379/433 (88%), Gaps = 34/433 (8%) Strand=Plus/Plus Query 1 ATGTCGTCGTCTCCCGAGAAG-A-A-GAGGAAGAAA-TGGTCACC---A--G-ACTCACT 50 |||||||||||||| |||||| | | |||||||||| | |||||| | | ||||||| Sbjct 1 ATGTCGTCGTCTCCAGAGAAGAAGAGGAGGAAGAAACT-GTCACCAGAATCGAACTCACT 59 Query 51 TCCCTATGATTTGATTGTGACCATCTTAGCCCGCCTCTCGCGATCCTATTACCCTAAGCT 110 ||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 60 TCCGAATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCAATCATATTACCCTAAGCT 119 Query 111 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAAACCCG 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 120 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAGACTCG 179 Query 171 AATCCTCTTAAGCCGCACTGAGACACTTCTCTATGTTTGCTTAAGCTTTCCTGATGAAGC 230 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 180 AATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCTGGTGAACC 239 Query 231 TAACCCTCGCTGGTTCACTCTCTACCGAAAACCTAATCAGATCCACACCACTAAGAAGAA 290 ||||||| ||||||||||||||||||| ||||||||||| | || |||||||| || | Sbjct 240 TAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCTTACCACTAA-AA-A- 296 Query 291 TAAGAAGAAGAAAGATGGTTCAAGTGTTCATCTTTTGGCTCCAACACCGATCCTCAACTC 350 |||||| ||| | | ||||||||||||||||||||| |||||||||| Sbjct 297 ---GAAGAA-AAA--T-----A-GTGTTCATCTTTTGGCTCCAA------TCCTCAACTC 338 Query 351 TCCTCCTGTGGAATTCTCAAGTCTTC-TCGCTGTTGGTTCTTATCTTTATGCCTTTAGCG 409 |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | Sbjct 339 TCCTCCTGTGGAATTCCCAAGTCT-CATCGCTGTTGGTTCTTATCTTTATGCCTTTAGAG 397 Query 410 CAGCCATGGAAGA 422 ||||||| ||||| Sbjct 398 CAGCCATTGAAGA 410 > AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:19862289-19863625 FORWARD LENGTH=1337 Length=1337 Score = 411 bits (222), Expect = 1e-113 Identities = 318/362 (88%), Gaps = 16/362 (4%) Strand=Plus/Plus Query 742 GGTTCTTTTTGTATGATAGAGG-AGATGA-CCTATCATTATGACCCTAGTGTAAAGTTTA 799 ||||||||||||||||||| || | || | ||||| |||||||||||||| ||||||| Sbjct 814 GGTTCTTTTTGTATGATAG-GGAACAT-AGCCTATTGTTATGACCCTAGTGGGAAGTTTA 871 Query 800 GATGGA-GAAAAAGT---A-TG-GG-AGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGG 852 |||||| | || || | || || ||||| ||||| | ||||| ||| ||||||||| Sbjct 872 GATGGATG-AATTGTAACACTGCGGAAGGAGACTGGAGCAGATTAGAGGGTTTAGAAGGG 930 Query 853 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTT 912 ||||||||||||||||||||||||||||||||||| ||||| | ||| || ||||||||| Sbjct 931 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGAATATGGCGGGAAGCTGGTT 990 Query 913 GTTTTGTGGGACAAGTATGT-GCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGC 971 |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| Sbjct 991 GTTTTGTGGGACAAGTATGTAGC-TGCAAGTGGGTATAAGGAGAAGATGATTTGGTGTGC 1049 Query 972 AGAAATTTCGCTTGAAAGGCGCAACAAAGAAGAGATTTTGGGGAAGGTCGAGTGGTTCGA 1031 ||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||| || Sbjct 1050 AGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGA 1109 Query 1032 TGCAGTTCTTACAGTCCCTAAGTCTTACAAATTTGT-TGATGCTAAATCTGCTACTGTTT 1090 ||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||| Sbjct 1110 TGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG-TGCTAAATCTGCTACTGTTT 1168 Query 1091 GA 1092 || Sbjct 1169 GA 1170 > AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:12304246-12305397 REVERSE LENGTH=1152 Length=1152 Score = 87.9 bits (47), Expect = 2e-16 Identities = 99/123 (80%), Gaps = 8/123 (7%) Strand=Plus/Plus Query 75 CTTAGCCCGCCTCTCGCGA-TCCTATTACCCTAAGCTCTC-C-TTAGTCTCCAAAAC-CT 130 |||||| ||| |||| || | | |||| || || ||||| | |||||||||||||| | Sbjct 81 CTTAGCTCGCATCTCAAGATTAC-ATTATCC-AA-CTCTCTCATTAGTCTCCAAAACATT 137 Query 131 TCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAAACCCGAATCCTCTTAAGCCGCACTG 190 || | | | ||||||||| ||||||||||||||||||||||||||||| |||| || | Sbjct 138 TC-GCTCTCTTCTTGCTTCAACGGAGCTTTACCAAACCCGAATCCTCTTAGGCCGAACCG 196 Query 191 AGA 193 ||| Sbjct 197 AGA 199 > AT4G33900.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:16251572-16252711 REVERSE LENGTH=1140 Length=1140 Score = 65.8 bits (35), Expect = 9e-10 Identities = 97/125 (78%), Gaps = 12/125 (10%) Strand=Plus/Plus Query 75 CTTAGCCCGCCTCTCGCGA-TCCTATTACCCTAAGCTCTC-C-TTAGTCTCC-AAAACCT 130 |||||| ||| |||| || | | |||| || || ||||| | ||||||||| |||| | Sbjct 69 CTTAGCTCGCGTCTCAAGATTAC-ATTATCC-AA-CTCTCTCATTAGTCTCCAAAAAATT 125 Query 131 TCAGAGCAATC--CTTGCTTCACCGGAGCTTTACCAAACCCGAATCCTCTTAAGCCGCAC 188 || || || ||||||||| |||||||||||||||||||||||||||| || | || Sbjct 126 TC---GCTTTCTTCTTGCTTCAAAGGAGCTTTACCAAACCCGAATCCTCTTAGGCGGAAC 182 Query 189 TGAGA 193 |||| Sbjct 183 GGAGA 187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5