BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319889
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superf... 654 0.0
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 411 1e-113
AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 87.9 2e-16
AT4G33900.1 | Symbols: | Galactose oxidase/kelch repeat superf... 65.8 9e-10
> AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:8794818-8795980 REVERSE LENGTH=1047
Length=1047
Score = 654 bits (354), Expect = 0.0
Identities = 554/645 (86%), Gaps = 36/645 (6%)
Strand=Plus/Plus
Query 466 GATTCTTTGAAAC-GTGTTGAAGTGTACAACATAGAGACTCAAACTTGGATTCCTGTGCC 524
|||||| || ||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 421 GATTCTCTG-AACTGTGTTGAAGTGTACAACACAGACACTCAAACTTGGATTCCTGTGCC 479
Query 525 GCCCAACAAACGGAGAGTCAAACT-CATACATATGAAAGGAAAGCTTTACATGAACGTTG 583
|||||||||||||| | ||||||| || |||||||||||||| |||||||||||| |||
Sbjct 480 GCCCAACAAACGGATATTCAAACTCCA-ACATATGAAAGGAATGCTTTACATGAAAGTTA 538
Query 584 GTAAACTTTTGA-----G-T---C---TTGCTGAGAAGGTTTTGCCTTTAAACCCAAAGG 631
|||||||||||| | | | ||||||| || || ||||||| || |||
Sbjct 539 GTAAACTTTTGAGCTTTGTTGCACAGGATGCTGAGGAGCTTGCGCCTTTATTTCCGAAGC 598
Query 632 TTCGATCATTGGAAATAATGTCTCCTAGGGATGTTATGGCTTTTAAGCCTGAGGTTTGTG 691
|||| ||| | || | | | ||| ||| ||| ||||||||||||| |||||| |
Sbjct 599 TTCGGTCA-T-----TACT-T-T-CTACGGAGGTTGTGGCTTTTAAGCCAAAGGTTT-CG 648
Query 692 G--GGCATTTGAAGCGTTAGGATTGGATACGGTCAATACAGATTTAAATCGAGGTTCTTT 749
| || || ||||| ||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 649 GAAGG-ATATGAAGTGTTAGGATT---TTCGGTCAATACAGATTTAGGTCGAGGTTCTTT 704
Query 750 TTGTATGATAGAGGAGATGACCTATCATTATGACCCTAGTGTAAAGTTTAGATGGAGAAA 809
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 705 TTGCATGATAGAGGAGATTACCTATCATTATGACCCCAGTGTAAAGTTTAGATGGAGAAG 764
Query 810 AAGTA-TGGGAGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGGCTACCTAAGTTTGCTA 868
||| | |||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 765 AAG-ACAGGGAGGAGTTTGGAGATCATTAGTGGGATTAGAAGGGCTACCTAAGTTTGCTA 823
Query 869 GATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGGACAAGT 928
||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 824 GATATAGTAGTGTTAAGTTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGCACAAGT 883
Query 929 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGCAGAAATTTCGCTTGAAA 988
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 884 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGGTTTGGTGCGCAGAAATTTCCCTTGAAA 943
Query 989 GGCGCAACAAAGAA-GAGATTTTGGGGAAGGTCGAGTGGTTCGATGCAGTTCTTACAGTC 1047
||||| ||| ||| ||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 944 AGCGCAGCAA-GAAAGAGATTTGGGGGAAGATCGAGTGGTTCGATGCAGTTCTTAGAGTC 1002
Query 1048 CCTAAGTCTTACAAATTTGTTGATGCTAAATCTGCTACTGTTTGA 1092
||||||| |||| |||| |||| |||||||||||||||||||||
Sbjct 1003 CCTAAGTATTACCAATTCGTTGGGGCTAAATCTGCTACTGTTTGA 1047
Score = 470 bits (254), Expect = 2e-131
Identities = 379/433 (88%), Gaps = 34/433 (8%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCTCCCGAGAAG-A-A-GAGGAAGAAA-TGGTCACC---A--G-ACTCACT 50
|||||||||||||| |||||| | | |||||||||| | |||||| | | |||||||
Sbjct 1 ATGTCGTCGTCTCCAGAGAAGAAGAGGAGGAAGAAACT-GTCACCAGAATCGAACTCACT 59
Query 51 TCCCTATGATTTGATTGTGACCATCTTAGCCCGCCTCTCGCGATCCTATTACCCTAAGCT 110
||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 60 TCCGAATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCAATCATATTACCCTAAGCT 119
Query 111 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAAACCCG 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAGACTCG 179
Query 171 AATCCTCTTAAGCCGCACTGAGACACTTCTCTATGTTTGCTTAAGCTTTCCTGATGAAGC 230
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 180 AATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCTGGTGAACC 239
Query 231 TAACCCTCGCTGGTTCACTCTCTACCGAAAACCTAATCAGATCCACACCACTAAGAAGAA 290
||||||| ||||||||||||||||||| ||||||||||| | || |||||||| || |
Sbjct 240 TAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCTTACCACTAA-AA-A- 296
Query 291 TAAGAAGAAGAAAGATGGTTCAAGTGTTCATCTTTTGGCTCCAACACCGATCCTCAACTC 350
|||||| ||| | | ||||||||||||||||||||| ||||||||||
Sbjct 297 ---GAAGAA-AAA--T-----A-GTGTTCATCTTTTGGCTCCAA------TCCTCAACTC 338
Query 351 TCCTCCTGTGGAATTCTCAAGTCTTC-TCGCTGTTGGTTCTTATCTTTATGCCTTTAGCG 409
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 339 TCCTCCTGTGGAATTCCCAAGTCT-CATCGCTGTTGGTTCTTATCTTTATGCCTTTAGAG 397
Query 410 CAGCCATGGAAGA 422
||||||| |||||
Sbjct 398 CAGCCATTGAAGA 410
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 411 bits (222), Expect = 1e-113
Identities = 318/362 (88%), Gaps = 16/362 (4%)
Strand=Plus/Plus
Query 742 GGTTCTTTTTGTATGATAGAGG-AGATGA-CCTATCATTATGACCCTAGTGTAAAGTTTA 799
||||||||||||||||||| || | || | ||||| |||||||||||||| |||||||
Sbjct 814 GGTTCTTTTTGTATGATAG-GGAACAT-AGCCTATTGTTATGACCCTAGTGGGAAGTTTA 871
Query 800 GATGGA-GAAAAAGT---A-TG-GG-AGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGG 852
|||||| | || || | || || ||||| ||||| | ||||| ||| |||||||||
Sbjct 872 GATGGATG-AATTGTAACACTGCGGAAGGAGACTGGAGCAGATTAGAGGGTTTAGAAGGG 930
Query 853 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTT 912
||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||
Sbjct 931 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGAATATGGCGGGAAGCTGGTT 990
Query 913 GTTTTGTGGGACAAGTATGT-GCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGC 971
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 991 GTTTTGTGGGACAAGTATGTAGC-TGCAAGTGGGTATAAGGAGAAGATGATTTGGTGTGC 1049
Query 972 AGAAATTTCGCTTGAAAGGCGCAACAAAGAAGAGATTTTGGGGAAGGTCGAGTGGTTCGA 1031
||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||
Sbjct 1050 AGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGA 1109
Query 1032 TGCAGTTCTTACAGTCCCTAAGTCTTACAAATTTGT-TGATGCTAAATCTGCTACTGTTT 1090
||| ||||||||||||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct 1110 TGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG-TGCTAAATCTGCTACTGTTT 1168
Query 1091 GA 1092
||
Sbjct 1169 GA 1170
> AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:12304246-12305397 REVERSE LENGTH=1152
Length=1152
Score = 87.9 bits (47), Expect = 2e-16
Identities = 99/123 (80%), Gaps = 8/123 (7%)
Strand=Plus/Plus
Query 75 CTTAGCCCGCCTCTCGCGA-TCCTATTACCCTAAGCTCTC-C-TTAGTCTCCAAAAC-CT 130
|||||| ||| |||| || | | |||| || || ||||| | |||||||||||||| |
Sbjct 81 CTTAGCTCGCATCTCAAGATTAC-ATTATCC-AA-CTCTCTCATTAGTCTCCAAAACATT 137
Query 131 TCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAAACCCGAATCCTCTTAAGCCGCACTG 190
|| | | | ||||||||| ||||||||||||||||||||||||||||| |||| || |
Sbjct 138 TC-GCTCTCTTCTTGCTTCAACGGAGCTTTACCAAACCCGAATCCTCTTAGGCCGAACCG 196
Query 191 AGA 193
|||
Sbjct 197 AGA 199
> AT4G33900.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16251572-16252711 REVERSE LENGTH=1140
Length=1140
Score = 65.8 bits (35), Expect = 9e-10
Identities = 97/125 (78%), Gaps = 12/125 (10%)
Strand=Plus/Plus
Query 75 CTTAGCCCGCCTCTCGCGA-TCCTATTACCCTAAGCTCTC-C-TTAGTCTCC-AAAACCT 130
|||||| ||| |||| || | | |||| || || ||||| | ||||||||| |||| |
Sbjct 69 CTTAGCTCGCGTCTCAAGATTAC-ATTATCC-AA-CTCTCTCATTAGTCTCCAAAAAATT 125
Query 131 TCAGAGCAATC--CTTGCTTCACCGGAGCTTTACCAAACCCGAATCCTCTTAAGCCGCAC 188
|| || || ||||||||| |||||||||||||||||||||||||||| || | ||
Sbjct 126 TC---GCTTTCTTCTTGCTTCAAAGGAGCTTTACCAAACCCGAATCCTCTTAGGCGGAAC 182
Query 189 TGAGA 193
||||
Sbjct 183 GGAGA 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5