BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319913
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20620.1 | Symbols: | Protein of unknown function (DUF626) ... 758 0.0
> AT2G20620.1 | Symbols: | Protein of unknown function (DUF626)
| chr2:8891929-8893244 REVERSE LENGTH=861
Length=861
Score = 758 bits (410), Expect = 0.0
Identities = 533/593 (90%), Gaps = 6/593 (1%)
Strand=Plus/Plus
Query 145 TTGGTGACTGTAACCCAACTCATGGTGCGATCGGTTGCACATTTCGATTATCAGATGACA 204
||| |||||||||||||| ||||| ||| ||||||||||||| || ||||||| |||| |
Sbjct 262 TTGATGACTGTAACCCAAGTCATGCTGCAATCGGTTGCACATATCAATTATCATATGATA 321
Query 205 TTGAATGCCATTGATCCAGCCAACAATTCATTTTCCAGTGTTGAAATCTGTGC-TTGGGA 263
||| ||||| ||||||||||||||||||| |||||||| ||||||| || | ||||||
Sbjct 322 TTGGATGCCTTTGATCCAGCCAACAATTCCCTTTCCAGTATTGAAATATG-CCTTTGGGA 380
Query 264 TGCTTCCATAGAGAATGATGAGAACTTGAGATTAGTCACCACTTTTTGCAGCCTTGAAGG 323
|||| || || ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 381 TGCTGCCGTAAAGAATAATGAGAAATTGAGATTAGTCACCACTTTTTGCAGCCTTGAAGG 440
Query 324 ATCTGGAGA-ACAAGGAACCCAATGGGATTTC-GATGGTGTAGACATGTTCTATAATGGT 381
|||||||| | |||| |||||||||| | | ||||||||||| || |||||| ||||
Sbjct 441 GTCTGGAGATA-AAGGTTCCCAATGGGA-TCCTAATGGTGTAGACGTGCTCTATACTGGT 498
Query 382 GTGATGCCTAAGTGGCTAGATGATAGTGCAATTACAGGAAGCGAGAAGCTACACTACTAT 441
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 499 GTGATGCCTAAGTGGCTAGATGATGGTGCCCTTTCAGGAAGCGAGAAGCTACACTACTAT 558
Query 442 GAGATTAATGATTCGGATTTGCAAGAGAATGAATGGCTTCATCTATATGCTCAAGTTGGA 501
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 559 GAGGTTAATGATTCCGATTTGCAAGAGAATAAATGGCTTCATCTATATGCTCAAGTTGGA 618
Query 502 GCATACTCTAAGTGGGATCTTGACATGGTTAATCATCTCCTGTTGGAGATAAAGAAAGCA 561
|||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||| |
Sbjct 619 GCATACTCTAAGTGGGATCTTGGCATGGTTAAACATTTCCCATTGGAGATAAAGAAAGTA 678
Query 562 GTGGTACAAACAAAGGAAGACGACATAGAGTCAAGTTTGAAGTTGAAGTCGAGCAATGCT 621
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 679 GTGGTACAAACAATGGAAGACGACATAGAGTCAAATTTGAAGTTGAAGTCGAGCAATGCT 738
Query 622 ATCTTCTACATAACTTTCACTACTCGTGGAGGCGACGAGTGCGCATGCATAGTAAGGCAA 681
|||||||| ||||| ||||| ||| ||||||| | |||||||||||||||| ||||||||
Sbjct 739 ATCTTCTATATAACCTTCACGACTAGTGGAGGTGTCGAGTGCGCATGCATAATAAGGCAA 798
Query 682 ACGTGGGATGGAAGACCACAACACATGTGCCTTGAAGTTAAAAATGTTGAGAT 734
||| || ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 799 ACGAGGAATGGAAGACCACAACACATGTGCCTTGAAATTAATAATGTTGAGAT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5