BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319921
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20720.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1363 0.0
AT3G50295.1 | Symbols: | pseudogene, hypothetical protein | ch... 102 8e-21
> AT2G20720.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:8927822-8930112 REVERSE LENGTH=2213
Length=2213
Score = 1363 bits (738), Expect = 0.0
Identities = 835/882 (95%), Gaps = 6/882 (1%)
Strand=Plus/Plus
Query 397 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGTGAGATGGACGAGAAAAAGATGCAA 456
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1148 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGCGAGATGGACGAGAAAAAGATGCAA 1207
Query 457 CCCCAAGGACTGT-CTTTTGACAAGCTTTTAACTTCTTACTCAATGGCATCTGATT-TAG 514
||||||||||| | | |||| |||||| || ||||||||||| |||||||||| || |||
Sbjct 1208 CCCCAAGGACTATGC-TTTGTCAAGCTCTTGACTTCTTACTCTATGGCATCTG-TTGTAG 1265
Query 515 ATGTACAAGGAATGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGAAAAATGGA 574
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1266 ATGTACAAGGTGTGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGACAAATGGA 1325
Query 575 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGGTTTATGGAAAAGGGTTTAG 634
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1326 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGATTTATGGAAAAGGGTTTAG 1385
Query 635 CTTTGCTTCGTAGGTCAGAGCCATCTGTTGGTGACGGC-GCTAGAGAAATCATCTATGGA 693
|||||||||||||||||||| ||| ||||| ||||||| | |||||||||||| ||||||
Sbjct 1386 CTTTGCTTCGTAGGTCAGAGACATTTGTTGATGACGGCTG-TAGAGAAATCATATATGGA 1444
Query 694 TGTCTCATGACTGCTTATTGTAGCGAGAATCTAACAGAGGATGTGTACCGTCTCTGGAAC 753
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1445 TGTCTCATGACTGTTTATTGTAACGAGAATCTAACAGAGGATGTTTACCGTCTCTGGAAC 1504
Query 754 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAAATGTTCTGATATCGTCAAGGCG 813
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1505 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAGATGTTCTGATATCGTCAAGGCG 1564
Query 814 TTTACGAAGAAGGGTGATCTCGATGAGGTTATGGAAGAGTGGAATGAGTGTCCCAATATT 873
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1565 TTTACGAAGAAGGGTGATCTCGATGGGGTTATGGAAGAGTGGAATGAGTGTCCCAATCTT 1624
Query 874 GATCTGATGGATTTTGGTCTCCAACATAGATGTATGAAGAAGGAGGCTGAGAAGATTGTG 933
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1625 GATCTGATGGACTTTGGTCTCCAACATAGATGCGTGAAGGAGGAGGCTGAGAAGGTTGTT 1684
Query 934 GATATGATTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCACACAAGGTTAATAATTTG 993
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1685 GATATGCTTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCTCACAAGGTTAATACTTTG 1744
Query 994 GTggaggatgaagatgataaagaagaggagaggaggaagagagtggcagaggccatggag 1053
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GTGGAGGATGAAGATGCTAAAGAAGAGGAGAGGAGGAAGAGAGTGGCAGAGGCCATGGAA 1804
Query 1054 gggaggCTGCATGACCAATGGAACCCAAAGAGCAGCATGGCTCTGTCCGCTTATGCCTGC 1113
|||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||
Sbjct 1805 GGGAGGCTGCATGACCGCTGGAACCCAAAGAACAGCATGGCTCTCTCCGCTTTTGCCTGC 1864
Query 1114 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTG 1173
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1865 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTTCTG 1924
Query 1174 AACAAGCGAGAGCAAGTGTTGCATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTG 1233
|| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1925 AATAAGCGAGAGCAAGTGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGATGGTG 1984
Query 1234 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 1275
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 2026
Score = 595 bits (322), Expect = 3e-169
Identities = 372/397 (94%), Gaps = 0/397 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCATCTTCTCCGGCAACAATTCAGTAATTTTTTCTGGAAACTTCCTTGCAGACGT 60
||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 590 ATGAAGCATCTTCTCCGACAACAATTCAGTAATTTCTTCTGGATCCTTCCTTGCAGACGT 649
Query 61 TCCTTCGTTCATTTCCCTAAAACCATTCCTTCACCGGAGCTCATTGATGACACTCTCAAG 120
||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 650 TCCTTCGTTCATTTCCCCAAAACCATTCCTTCGCCGGAGCTCATTAATGACACTCTCAAG 709
Query 121 CGTCGGATCGAGCGAGTCCAAGATTCGACGGTCTCCATCACTCCGTTGCTCCGAGAATGG 180
||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 710 CGTCGGATCCAGAGAGTCCAAGATTCGTCAGTCTCCATCACTCCGTTGCTCCGAGAATGG 769
Query 181 TGCGAACGCGGAAATCAAACGGCACTTTCAGAACTCAGAAGCATCATCACCTCTCTTCAC 240
||| |||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||
Sbjct 770 TGCCAACGCGGAAATCAAACGGGACTTTCAAAACTCAGGAGCATCATTACCTCTCTTCAC 829
Query 241 AGATCCAATCGCTTCTTTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCT 300
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGATCCAATCGCTTCTCTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCC 889
Query 301 TACAAGCTGAGTTCGATGGATTTTGAGCGACGGCTTTACTTGACTGCAAAAGTTTGTGGT 360
|| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||| |||||
Sbjct 890 TATAAGCTGAGTTCAATGGATTTTGAGCGACGACTTTTCTTGGCTGCTAAAGTTGGTGGT 949
Query 361 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 397
|||||||||||||||||||||||||||||||||||||
Sbjct 950 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 986
> AT3G50295.1 | Symbols: | pseudogene, hypothetical protein |
chr3:18641798-18642664 FORWARD LENGTH=867
Length=867
Score = 102 bits (55), Expect = 8e-21
Identities = 189/252 (75%), Gaps = 15/252 (6%)
Strand=Plus/Plus
Query 1019 agg-agaggaggaagagagtggcaga-ggccatggaggggaggCTGCATGACCAATGGAA 1076
||| |||||||| ||| || | ||| ||| ||||||| ||||| | | || |||| |
Sbjct 619 AGGAAGAGGAGG-AGA-AGAAGAAGACGGCAATGGAGGTGAGGC-G--TAACGGATGGGA 673
Query 1077 CCCAAAG-AGCAGCATGGC-TCTGTCCGCTTATGCCTGCGTGCAATATGTGGAGGGTCGG 1134
||| ||| | | | | || | |||| || || || || || |||||||||||||| | |
Sbjct 674 CCCCAAGAAAAATC-TTGCAT-TGTCTGCGTACGCATGTGTTCAATATGTGGAGGGCCAG 731
Query 1135 AGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTGAACAAGCGAGAG-CA-AGTGT 1192
|||||||| |||||||||| | || ||||| | || ||||| ||| || | |
Sbjct 732 AGAGACATTGAGAGTACAGTTGATGTTTTGAGATTGTTGGGGAAGCGTGAGCCACA-AGA 790
Query 1193 TGCATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTGGAGGCAATGAGAGGAGGAG 1252
||| | ||||| ||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 791 TGC-TATTATGGATGAAGACCGATTGAGTAAGAAAATGGTAGAGGCAATGAGAGGAGGAG 849
Query 1253 GATACGTTGGTG 1264
||||||||||||
Sbjct 850 GATACGTTGGTG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5