BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319935
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20830.2 | Symbols: | transferases;folic acid binding | chr... 2050 0.0
> AT2G20830.2 | Symbols: | transferases;folic acid binding | chr2:8968209-8970630
REVERSE LENGTH=1608
Length=1608
Score = 2050 bits (1110), Expect = 0.0
Identities = 1235/1297 (95%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAC 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 ATGAGTTCTGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAT 211
Query 61 ATTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTCGTGTCGGGTCGTGAAGAAGCT 120
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 212 GTTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTTGTGTCCGGTCGTGAAGACGCT 271
Query 121 CGTCATCTGGGTTTGAAACTCGGGTTCGAAACAGGCGAGCTTATTGGATTCTACAAAGGT 180
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 272 CGTCATCTGGGTTTGAAACTCGGGTTCGAGACAGGCGAGCTGATTGGATTCTACAGAGGT 331
Query 181 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCCACTCGCTTCTCTCCTCAGCTC 240
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 332 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCTACACGCTTCTCTCCTCAGCTC 391
Query 241 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAATTCCCGCTTTTGGATCCCGAG 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 392 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAAATCCCGCTTTTGGATCCCGAG 451
Query 301 GACGAAGCCAAAGACGGGATTAAGGATGATCTCAGACTCAAATTCAGCATCATTTGTGCA 360
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 452 GACGAAGCTAAAGACGGGATCAAGGATGATCTCAGAGTCAAATTCAGCATCATTTGTGCA 511
Query 361 TCTCTCAGCATTTCCAAGAAACAATTGGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 420
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 512 TCTCTCGGCTTTTCCAAGAAACAATTTGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 571
Query 421 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACCGCCCTCGAAGCTATTGAG 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 572 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACGGCCCTCGAAGCCATTGAG 631
Query 481 AGAGCTGTAAAGGCTTTTCCACCAGCTGCAATCGTCAACAAGTTTGAAGATGCGGCTTAT 540
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 632 AGAGCTTTAAAGCCTTTTCCACCAGCTGCAATTGTCAACAAGTTTGAAGATGCGGCTTAT 691
Query 541 GGTAGGGTTGGTTACACTGTTGTATCCTCGCTTGCAAAAGGGTCATCTTCTTCCTTGAAG 600
|| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 692 GGCAGGGTTGGTTACACTGTTGTATCCTCGCTTGCTAACGGGTCGTCTTCTTCCTTGAAG 751
Query 601 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGATACTATCAATCTTGAGTTGCATTGT 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 752 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGACACTATCAATCTTGAGTTGCACTGT 811
Query 661 GGTACC-CATCCTCGGCTTGGAGTGGTCGACCACATATGCTTTCACCCTTTGTCTCAAAC 719
|| | | ||||| || ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 812 GG-ATCTCATCCCCGCCTTGGAGTGGTTGACCACATATGCTTTCACCCCTTATCTCAAAC 870
Query 720 CTCTATAGAACAAGTTTCTTCCGTGGCCAATTCCGTAGCGATGGATATCGGCTCCATTCT 779
|||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct 871 CTCTATAGAACAAGTTTCTTCCGTCGCCAATTCCCTTGCAATGGATATCGGCTCCATTCT 930
Query 780 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACGCTGGATTCGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 931 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACCCTGGATTCGAT 990
Query 840 CAGAAGGAAGCTGGGGTACTTCAAGGCGAACAGGGAGGGACATGAATGGGCAGGTGGGTT 899
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 991 CAGAAGAAAGCTGGGGTACTTCAAGGCAAACAGGGAGGGACATGAATGGGCAGGTGGGTT 1050
Query 900 AGAGCTGGAGATGGTGCCGGTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 959
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TGACCTGGAGATGGTGCCACTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 1110
Query 960 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTGAGTAACTATAATGTGCCTGTCATGTC 1019
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1111 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTAAGTAACTATAACGTGCCTGTCATGTC 1170
Query 1020 AAACGATCTTAAGGCAGTGAGGAGAATGGCGAGGAAGGCGAGCGAGAGAGGAGGGGGCTT 1079
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1171 AAACGATCTCAAGGCAGTGAGGAGAATAGCGAGGAAGACGAGCGAGAGAGGAGGGGGCTT 1230
Query 1080 GGCTTCAGTGCAGACAATGGCGCTGGTACACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1231 GGCTTCAGTGCAGACAATGGCGCTGGTGCACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1290
Query 1140 CTTGTTGAATCCAAGCCAAGTGGGAGGAGATGAAGTTCAGGGACTGATCGAGAGGCTTGG 1199
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1291 CTTGTTGAATCCAAGCCAAGTGGGGGGAGATGAAGTACAGGGACTGATCGAGAGGCTTGG 1350
Query 1200 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTACACGGACCATACACCCGACCAGAT 1259
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1351 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTATACGGACTATACACCTGACCAGAT 1410
Query 1260 CGTTCAAAGATATATGGACTTGCTCAGTAATTCATAA 1296
|||| ||||||||||||||||||||| |||||||||
Sbjct 1411 CGTTGAAAGATATATGGACTTGCTCAACAATTCATAA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5