BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319991 Length=531 Score E Sequences producing significant alignments: (Bits) Value AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158... 721 0.0 > AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158390-9159701 FORWARD LENGTH=685 Length=685 Score = 721 bits (390), Expect = 0.0 Identities = 487/533 (91%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 1 ATGATGATGATAATGGGAAGAAGGTGTGAAGATTGTGGTAATCAAGCAAAGAAAGAGTGT 60 ||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| ||| Sbjct 1 ATGATGATGATAATGGGGAGAAAATGTGAAGATTGTGGGAATCAAGCGAAGAAAGATTGT 60 Query 61 TTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTTCATTGCCAAACTCACATC 120 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTCCATTGCCAAACTCACATC 120 Query 121 AAGAGCACTTGGGTTCCTGCCTATAGAAGACCTCATCACAAACACCAATCGCAATCGCAA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 121 AAGAGCACTTGGGTTCCTGCCTATAGAAGATCTCATCACAAACACCAATCGCAA-C-C-- 176 Query 181 CCGCCCTCTACTAGTAACCCAAAACGTGTACAAATTCGCACTACTC-TGGGACATTTTCC 239 || ||||||||||| ||||||| |||||||||| | |||||||| ||| ||||||||| Sbjct 177 --GCTCTCTACTAGTATCCCAAAAGGTGTACAAATCCACACTACTCCTGG-ACATTTTCC 233 Query 240 GGCAGAGTTGAGTTCTCTGGCTGATTTCCGATGCGTAAAAGTGAGTTCAATCGACGATGG 299 ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| Sbjct 234 GGCAGAGTTGAGTTCCCTAGCAGATTTCCGATGCGTAAAAGTGAGTTCAATCGATGATGG 293 Query 300 AAAGGAGCAATACGCTTATCAGACGACGGTGAACATCGGAGGACATGTTTTCAGAGGGAT 359 ||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 294 AAAAGAGCAATATGCTTATCAGACCACGGTGAACATTGGAGGACATGTTTTCAGAGGGAT 353 Query 360 TCTTCACGATCAAGGACTCGAGGAAGGGATGATAGATCATCATTATAATAAAAATAGTAA 419 ||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||| Sbjct 354 TCTTCACGATCAAGGACTCCACAAAGTGATGGTAGATCATCATTATAATAAAAATAGTAA 413 Query 420 TAATCATCAAGAGTCACTT-CATCCTTCAACATCTTCATGTCCCTTGATGACCACTAGTC 478 |||||||||||||| |||| | ||||||||| |||||||||||||||| || ||| |||| Sbjct 414 TAATCATCAAGAGTTACTTAC-TCCTTCAACTTCTTCATGTCCCTTGAAGATCACAAGTC 472 Query 479 CTTTTACCGATTTCATGTCCCGTGCCCAATTTTCTTCGGTCCTAAGAAGATAG 531 |||||||||||||||||| | || ||| ||||||||||||||||||||||||| Sbjct 473 CTTTTACCGATTTCATGTTCGGTACCCGATTTTCTTCGGTCCTAAGAAGATAG 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25418478382 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5