BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319991

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158...   721    0.0  


> AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158390-9159701 
FORWARD LENGTH=685
Length=685

 Score =  721 bits (390),  Expect = 0.0
 Identities = 487/533 (91%), Gaps = 10/533 (2%)
 Strand=Plus/Plus

Query  1    ATGATGATGATAATGGGAAGAAGGTGTGAAGATTGTGGTAATCAAGCAAAGAAAGAGTGT  60
            ||||||||||||||||| ||||  |||||||||||||| |||||||| |||||||| |||
Sbjct  1    ATGATGATGATAATGGGGAGAAAATGTGAAGATTGTGGGAATCAAGCGAAGAAAGATTGT  60

Query  61   TTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTTCATTGCCAAACTCACATC  120
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   GTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTCCATTGCCAAACTCACATC  120

Query  121  AAGAGCACTTGGGTTCCTGCCTATAGAAGACCTCATCACAAACACCAATCGCAATCGCAA  180
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |  
Sbjct  121  AAGAGCACTTGGGTTCCTGCCTATAGAAGATCTCATCACAAACACCAATCGCAA-C-C--  176

Query  181  CCGCCCTCTACTAGTAACCCAAAACGTGTACAAATTCGCACTACTC-TGGGACATTTTCC  239
              || ||||||||||| ||||||| |||||||||| | |||||||| ||| |||||||||
Sbjct  177  --GCTCTCTACTAGTATCCCAAAAGGTGTACAAATCCACACTACTCCTGG-ACATTTTCC  233

Query  240  GGCAGAGTTGAGTTCTCTGGCTGATTTCCGATGCGTAAAAGTGAGTTCAATCGACGATGG  299
            ||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||
Sbjct  234  GGCAGAGTTGAGTTCCCTAGCAGATTTCCGATGCGTAAAAGTGAGTTCAATCGATGATGG  293

Query  300  AAAGGAGCAATACGCTTATCAGACGACGGTGAACATCGGAGGACATGTTTTCAGAGGGAT  359
            ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  294  AAAAGAGCAATATGCTTATCAGACCACGGTGAACATTGGAGGACATGTTTTCAGAGGGAT  353

Query  360  TCTTCACGATCAAGGACTCGAGGAAGGGATGATAGATCATCATTATAATAAAAATAGTAA  419
            ||||||||||||||||||| |  ||| |||| ||||||||||||||||||||||||||||
Sbjct  354  TCTTCACGATCAAGGACTCCACAAAGTGATGGTAGATCATCATTATAATAAAAATAGTAA  413

Query  420  TAATCATCAAGAGTCACTT-CATCCTTCAACATCTTCATGTCCCTTGATGACCACTAGTC  478
            |||||||||||||| |||| | ||||||||| |||||||||||||||| || ||| ||||
Sbjct  414  TAATCATCAAGAGTTACTTAC-TCCTTCAACTTCTTCATGTCCCTTGAAGATCACAAGTC  472

Query  479  CTTTTACCGATTTCATGTCCCGTGCCCAATTTTCTTCGGTCCTAAGAAGATAG  531
            |||||||||||||||||| | || ||| |||||||||||||||||||||||||
Sbjct  473  CTTTTACCGATTTCATGTTCGGTACCCGATTTTCTTCGGTCCTAAGAAGATAG  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5