BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319997
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21465.1 | Symbols: | Defensin-like (DEFL) family protein |... 261 2e-69
> AT2G21465.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:9195596-9195926 REVERSE LENGTH=243
Length=243
Score = 261 bits (141), Expect = 2e-69
Identities = 215/250 (86%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 1 ATGGCCGCATCAAAAACTACAATCTTCATCGTTTTTGTTCTTTGTCTTTCATGCACATTG 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 ATGGCCGCATCAAAAACTACAATCTTCATCGTTTTCGTTCTTTGTCTTTCATGCACGCTG 60
Query 61 TTGGTGAATATCTCTGGAATTCAAGCCACTGGACCAAGCTCGACATCAAAAGAGAGCCTA 120
||||||||||| |||||||||||||||||| | ||||||||| ||||||||| |||
Sbjct 61 TTGGTGAATATATCTGGAATTCAAGCCACT--A----GCTCGACATTAAAAGAGAGTCTA 114
Query 121 ACAGCCGAGACTGAGCTGACCAATGG-GGAGCGATGCAAGACGGATAATGATTGTCCCCA 179
||||| |||| | ||| ||| || || ||| || |||||||||||| ||||||||||||
Sbjct 115 ACAGCTGAGATTAAGCCGACGAA-GGTGGATCGGTGCAAGACGGATCGTGATTGTCCCCA 173
Query 180 ATCCCATCCATGCCCTAAAGAGTTTTATTATGCTTGCCTTCTTGGAGAATGTACTTGTAT 239
||| |||| ||||| ||||| |||||||||| |||| || |||||||||||| |||||
Sbjct 174 ATCTCATCGATGCCAAAAAGACTTTTATTATGGTTGCGTTGTTGGAGAATGTATTTGTAG 233
Query 240 CGCTATTTGA 249
||| |||||
Sbjct 234 AGCTGTTTGA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5