BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320007
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21580.1 | Symbols: | Ribosomal protein S25 family protein ... 327 2e-89
AT4G39200.1 | Symbols: | Ribosomal protein S25 family protein ... 300 4e-81
> AT2G21580.1 | Symbols: | Ribosomal protein S25 family protein
| chr2:9236523-9237746 FORWARD LENGTH=669
Length=669
Score = 327 bits (177), Expect = 2e-89
Identities = 199/210 (95%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG 283
Query 61 CTCATCACTCCGTCGATTCTCTCCGACCGTATGAGGATCAATGGGTCTCTTGCGAGGAGA 120
||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 284 CTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCTCTTGCGAGGAGG 343
Query 121 GCCATAAGGGAGCTAATGGCCAAGGGTTTGATCAGGATGGTCTCTGCTCACTCGAGCCAG 180
|| || |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 344 GCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAG 403
Query 181 CAGATCTACACTCGTGCCACCAACACCTAA 210
||||||||||||||||||||||||||||||
Sbjct 404 CAGATCTACACTCGTGCCACCAACACCTAA 433
> AT4G39200.1 | Symbols: | Ribosomal protein S25 family protein
| chr4:18257336-18258680 FORWARD LENGTH=671
Length=671
Score = 300 bits (162), Expect = 4e-81
Identities = 195/211 (92%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTGTTTGATCAAGGC-ACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAA 59
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATGGTGCTGTTTGATCAA-GCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAA 304
Query 60 GCTCATCACTCCGTCGATTCTCTCCGACCGTATGAGGATCAATGGGTCTCTTGCGAGGAG 119
||||||||| || || |||||||| ||||||||||||||||||||||| || || |||||
Sbjct 305 GCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATCAATGGGTCGCTAGCAAGGAG 364
Query 120 AGCCATAAGGGAGCTAATGGCCAAGGGTTTGATCAGGATGGTCTCTGCTCACTCGAGCCA 179
||| || ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 365 AGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGAGCCA 424
Query 180 GCAGATCTACACTCGTGCCACCAACACCTAA 210
|||||||||||||||||||||||||||||||
Sbjct 425 GCAGATCTACACTCGTGCCACCAACACCTAA 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5