BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320010
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21610.1 | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:... 1554 0.0
> AT2G21610.1 | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:9245161-9247025
REVERSE LENGTH=1059
Length=1059
Score = 1554 bits (841), Expect = 0.0
Identities = 988/1059 (93%), Gaps = 9/1059 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCTTTATAAAACAAAGTCCAAACGTTCAATTGCTAACTATTATCATATCATACTC 60
||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGGACTTTATAAAACGAAGTCCAAACGTTCAATTGCTAACTATCATCATATCATAATC 60
Query 61 ATCAATATTTTCATTCTCTCTTCAATCACATTTTCATCCATGGCTTCTTCTAATTCTTCT 120
|||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 61 ATCAATATTTTCATCCTCTCTTCAATCACATCTTCTTCCATGGCTTCTTC---TTCTTCT 117
Query 121 TCGTCTTCCATTGATTTTTCTACTGCAATTCTAATAAGGGTTGATCAATCGGGCAAAGGA 180
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 118 CCATCTTCCATTGATTTTTCGACTGCAATTCTAATAAGAGTTGATCAATCGGGCAAAGGA 177
Query 181 GACTTCAGTAAGATTCAAGAAGCAATAGAATCTATCCCTCCCAATCTAAACAACTCTCAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 GACTTCAGTAAGATTCAAGAAGCAATTGAATCTATCCCTCCCAATCTAAACAACTCTCAA 237
Query 241 CTCTATTACATTTGGGTTAAGCCTGGAATTTACCGAGAAAAGGTGGTGATTCCTGCGGAT 300
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 238 CTCTATTTCATTTGGGTTAAGCCTGGAATTTACCGAGAAAAAGTGGTGATACCTGCGGAG 297
Query 301 AAACCCTACATAACATTGAGTGGAACACAAGCTTCCAACACCTTTCTCATATGGAGCGAT 360
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 298 AAACCCTACATAACATTGAGTGGGACACAAGCTTCCAACACTTTTCTCATATGGAGCGAT 357
Query 361 GGTGGAGACATTTTGGAATCACCCACTCTCACAATATTTGCCA-CCGATTTCGTATGTCG 419
|| | ||||||||||||||||||||||||||| || |||| || ||||||| ||||| ||
Sbjct 358 GGCGAAGACATTTTGGAATCACCCACTCTCACTATCTTTG-CATCCGATTTTGTATGCCG 416
Query 420 ATTTCTCACTATTCAGAATAAGCTTGGAACGGCGGGACGGGCGGTTGCACTGCGGGTGGC 479
|||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 417 ATTTCTCACTATTCAGAATAAGTTTGGAACGGCGGGACGTGCGGTTGCACTGAGGGTGGC 476
Query 480 AGCGGATAAGGCAGCGTTCTATGGATGCGTGATAACATCGTACCAAGACACTCTCCTTGA 539
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 477 GGCGGATAAGGCAGCGTTCTACGGATGCGTGATAACGTCGTACCAAGACACTCTCCTTGA 536
Query 540 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 596
Query 600 TGGAAGCGCTTCTTCTCTCTATGAAAGATGTCATCTACACTCGTTGTCACCGACTAAAGG 659
|||||||||||||||||| |||||||| |||||| ||||||||||||| |||| ||| ||
Sbjct 597 TGGAAGCGCTTCTTCTCTATATGAAAGGTGTCATTTACACTCGTTGTCGCCGAATAATGG 656
Query 660 GTCTATAACGGCGCAAATGAGAACGTCGGCGACGGAGAAATCAGGGTTTATATTCTTGGG 719
|||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||
Sbjct 657 GTCTATAACGGCGCAAATGAGAACGTCGGCCACAGAGAAATCAGGCTTTACATTCTTGGG 716
Query 720 ATGCAAGTTAACCGGATCCA-GTTCCACGTATTTGGGAAGGCCATGGGGACCTTATTCTA 778
|||||||||||| |||| || ||||||| | ||||||||| ||||||||| |||||||||
Sbjct 717 ATGCAAGTTAACTGGAT-CAGGTTCCACATTTTTGGGAAGACCATGGGGAGCTTATTCTA 775
Query 779 GGGTTATCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCGAGGGTGGAACCAAT 838
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 776 GGGTTGTCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCAAGGATGGAACCAAT 835
Query 839 GGGGAGATTCAACCAAAGAAAATACCGTATATTATGGTGAATACAAATGTTACGGTCCCG 898
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 836 GGGGAGATTCAACCAAAGAAAATACTGTATATTATGGTGAATACAAATGTTATGGTCCCG 895
Query 899 GAGCAGACAGGGGACAAAGAGTAAAATGGTCAAAACAATTATCCGACGACGAAGCTACCG 958
|||||||||||| |||||||||| ||||||||||||| ||||| || || ||||||||||
Sbjct 896 GAGCAGACAGGGAACAAAGAGTAGAATGGTCAAAACAGTTATCGGATGAAGAAGCTACCG 955
Query 959 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCCCACT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCTCACT 1015
Query 1019 TCAAAAAATGGTCCCAAATAAACCCGAAAATATATAAAT 1057
|||| || || ||||||| |||||| |||||| | ||||
Sbjct 1016 TCAAGAA-TGCTCCCAAACAAACCC-AAAATAAAGAAAT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5