BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320017
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putativ... 1275 0.0
> AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putative
/ phenylalanine--tRNA ligase, putative | chr4:18281444-18284900
REVERSE LENGTH=1724
Length=1724
Score = 1275 bits (690), Expect = 0.0
Identities = 1256/1515 (83%), Gaps = 95/1515 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAGGCGATTCTAGGGTAT-CTGCTGGACAACGAAGAGATCACGGATTCCGG 59
|||||||| |||||||| ||||||| | || | | |||| ||| ||||||| ||||| ||
Sbjct 70 ATGGCGGAAGAGGCGATACTAGGGT-TCCTTCAGAACAATGAACAGATCACTGATTCGGG 128
Query 60 TCAATTCTCCGATGAGCAT-AACCTTAACCACGACGAAGTCGTCAATGTCATCAAGAGGT 118
||||||||| | ||| | ||| | ||||| ||||| |||||||||||||||| | ||
Sbjct 129 TCAATTCTCTGCCGAG-TTCAACATCGACCACAACGAACTCGTCAATGTCATCAA-AAGT 186
Query 119 -TACATGCTTTCCGTTACATCGATTTTCAGAACATT-AAACGG-GTATCATCGG-TTCTG 174
| |||| ||| |||||||||||| ||||| ||||| ||| || | | ||| || |||||
Sbjct 187 CTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG-A-CAT-GGATTCTG 243
Query 175 ACTGATGAAGGGAAGAAATATGCGGCGGAAGGATCGCCAGAGGTAC-ATTATTTCTTGGC 233
|||||||||||||||||||||||||| ||||| || |||||||| | | | |||||| ||
Sbjct 244 ACTGATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAACT-TTTCTTAGC 302
Query 234 TGTTCCTGCAGAAGGTAGCATATCCAAGGAAGAACTCCAGAAAAAGCTT-TCTCCTTCAG 292
|||||||| |||||| |||||||| || || || |||||||||||| || ||||| |||
Sbjct 303 TGTTCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAG-TTAGCTCCTGCAG 361
Query 293 ATTGGAAGTCTAAGACTTCTGTATTCAGAATTGGCTCTATGTACGCTGTG-AAAAACAAG 351
| || |||| || | | | || ||| | | |||| | |||||||||
Sbjct 362 --T---CTTC-AAGA--TC-G---GCTG--TT--CTC-A---A-GCTG-GAAAAAACAAG 399
Query 352 TGGGTGGAAGGGGGAAAGCAAGTCTCTAGGAAGGTTCAACATGTTGAAGATAAAGTG-AA 410
||||||||| ||||||||||||||| ||||||||| || |||| |||||||||||| ||
Sbjct 400 TGGGTGGAAATGGGAAAGCAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAA 459
Query 411 GAACTTGCTTTTACAAATACAGGAA-GGAATGGAACTTGACGAAGAAAGTCTCAATTATC 469
| | ||||||||||||||| || |||| |||| ||||| |||||||| |||| | ||
Sbjct 460 G-GCCAGCTTTTACAAATACAACAAGGGAA-GGAATTTGACAAAGAAAGTATCAA-T-TC 515
Query 470 TCaaaaaaaCCAGAAGCCTTGTAGAAGAAAAGGTATGGAAGGGCTATTCCGTGAAGAAAG 529
|| ||| |||||| || ||| | | || |||||||||| |||||||| |||||||
Sbjct 516 TC-TTAAAGCCAGAAAACTCATAGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAG 574
Query 530 GTCCTAATTATGCTCCCAAAAGAATGAGTTTTGCCACCGACTTGTCACGAGAAAATC-T- 587
||||||||||||||||| | |||| || | || ||||| ||| | |||||||||| |
Sbjct 575 GTCCTAATTATGCTCCCGAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTC 634
Query 588 ---AC-----------A-A----AA-GAGTATAACTTCAATGCTAAATGA-CAGCCTGTT 626
|| | | || |||||||||||||| |||||| || | |||||||
Sbjct 635 AAAACTGGAAAGAGTTAGAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGC-GCCTGTT 693
Query 627 GATGCTGGACATCTTCACCCCCTTCTCAAGGTACTCAAATGTACGGAAGCAGTTCAAAGA 686
|| ||||| ||||||||| | |||||||||| || ||||||||||| |||||
Sbjct 694 GACGCTGGGCATCTTCACGCTCTTCTCAAGG--------TG--CGGAAGCAGTTTAAAGA 743
Query 687 CATATTTCG-TCAGATGGGATTTGAAGAGATGCCAACAAACAACTTTGTGGAGAGCAGCT 745
||||||| | ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 744 CATATTT-GTTCAGATGGGGTTTGAGGAGATGCCAACAAACAACTATGTGGAGAGCAGCT 802
Query 746 TCTGGAATTTTGATGCACTGTTCCAGCCTCAGCAGCATCCTGCTCGTGACTCTCATGACA 805
|||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 803 TCTGGAATTTTGATGCTTTGTTCCAGCCTCAGCAGCACCCTGCTCGTGATTCTCATGACA 862
Query 806 CCTTCTTTCTAAAAGCTCCTTCAACTACAAGGGA-A-TTGCCAGAAGATTATGTTGAGAG 863
||||||||||||||| ||| || |||||||| | | || || |||||||||||||||||
Sbjct 863 CCTTCTTTCTAAAAGTTCCCTCTACTACAAGA-ACACTT-CCGGAAGATTATGTTGAGAG 920
Query 864 GGTGAAACAAGTTCATGAGTCTGGTGGATATGGATCGAGAGGGTATAATTATGATTGGAA 923
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 921 GGTGAAACGTGTTCATGAGTCTGGTGGTTATGGATCAAGAGGGTATAATTATGATTGGAA 980
Query 924 AAGAGAGGAAGCAAACAAAAATCTCCTTCGTACCCACACAACAGCGGTCTCATCTAGGAT 983
|||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||||||
Sbjct 981 AAGAGAAGAAGCAAACAAGAATCTTCTTCGTACCCACACAACGGCTGTCTCATCTAGGAT 1040
Query 984 GCTTTATGCACTTGCAAAGAAACCTTTCACT-CCCAAGAAGTACTTTTCTATAGACCGTG 1042
|||||||||||| ||| |||||||||| | ||||||||||||||||| || |||||||
Sbjct 1041 GCTTTATGCACTAGCACAGAAACCTTTTG-TGCCCAAGAAGTACTTTTCGATTGACCGTG 1099
Query 1043 TCTTCAGAAACGAGGCTGTTGACCGAACCCATCTGGCAGAGTTCCATCAGATTGAAGGTT 1102
|||||||||||||||||||||| || ||||| || |||||||||||||| ||||||||||
Sbjct 1100 TCTTCAGAAACGAGGCTGTTGATCGGACCCACCTTGCAGAGTTCCATCAAATTGAAGGTT 1159
Query 1103 TGGTCTGTGACCGTGGCCTTACA-TTGGGTGATCTCATCGGTGTATTACGG-GACTTCAT 1160
|| | ||||| || ||||||||| |||| || || || ||||||||| | |||||| |
Sbjct 1160 TGATATGTGATCGGGGCCTTACACTTGGA-GACCTGATTGGTGTATTA-GAAGACTTCTT 1217
Query 1161 CTCACGCTTAGGGATGTCCAAGCTGCGCTTCAAGCCTGCTTACAACCCTTACACCGAACC 1220
|||||||||||||||||| || |||| |||||||| ||||||||||||||||| || ||
Sbjct 1218 CTCACGCTTAGGGATGTCGAAATTGCGTTTCAAGCCAGCTTACAACCCTTACACAGAGCC 1277
Query 1221 AAGCATGGAGATTTTCAGCTACCACGAAGGATTAGGGAAATGGGTAGAAATTGGAAACTC 1280
|||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||
Sbjct 1278 AAGCATGGAGATTTTCAGCTACCATGAAGGTTTAGGGAAGTGGGTGGAGATTGGAAACTC 1337
Query 1281 TGGCATGTTCAGACCAGAAATG-TTGCTACCGATGGGTCTCCCAGAGGACGTTCGAGTCA 1339
||| ||||||||||| |||||| || ||||||||||||||||| ||||| ||| ||||||
Sbjct 1338 TGGGATGTTCAGACCCGAAATGCTT-CTACCGATGGGTCTCCCCGAGGATGTTAGAGTCA 1396
Query 1340 TTGCATGGGGTCTCTCTCTTGAAAGACCAGCAATGATTTTATACGACATTGACAACATCC 1399
| || |||||||||||||||||||||||| ||||||| ||||||| || ||||||||||
Sbjct 1397 TCGCTTGGGGTCTCTCTCTTGAAAGACCAACAATGATATTATACGGTATCGACAACATCC 1456
Query 1400 GTGACCTGTTTGGACACAAGGTGGATCTTGGTCTCATTAAACGGAATCCGATCTGTCGCA 1459
| || |||||||||||||||||||||| | ||| |||||||||||||||||||| || |
Sbjct 1457 GAGATTTGTTTGGACACAAGGTGGATCTCGATCTTATTAAACGGAATCCGATCTGCCGAA 1516
Query 1460 TTGGAATCGA-GTGA 1473
|||||||| | ||||
Sbjct 1517 TTGGAATCTAAGTGA 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5