BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320022
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21890.1 | Symbols: CAD3, ATCAD3 | cinnamyl alcohol dehydrog... 1784 0.0
AT2G21730.1 | Symbols: CAD2, ATCAD2 | cinnamyl alcohol dehydrog... 1759 0.0
AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrog... 765 0.0
> AT2G21890.1 | Symbols: CAD3, ATCAD3 | cinnamyl alcohol dehydrogenase
homolog 3 | chr2:9331089-9332646 FORWARD LENGTH=1128
Length=1128
Score = 1784 bits (966), Expect = 0.0
Identities = 1075/1129 (95%), Gaps = 2/1129 (0%)
Strand=Plus/Plus
Query 1 ATGGTAGATCGAAATAAAGCATTTGGTTGGGCGGCCAACGACGAATCTGGCGTCCTCTCT 60
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGTAGATCAAAATAGAGCATTTGGTTGGGCGGCCAACGACGAATCGGGCGTCCTCTCT 60
Query 61 CCATTTCATTTCTCTAGAAGAGAAAATTGTGAGAACGATGTAACAGTGAAAATCTTGTTC 120
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 61 CCATTTCATTTCTCTAGAAGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTC 120
Query 121 TGTGGTGTTTGTCACTCTGATCTTCACACCATCAAAAACCACTGGGGAATCTCTCGTTAC 180
|||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||
Sbjct 121 TGTGGTGTTTGTCACTCTGATCTTCATACCATCAAGAACCATTGGGGATTCTCTCGTTAC 180
Query 181 CCCGTTGTTCCCGGGCATGAAATCGTTGGAATAGCTACAAAAGTTGGTAAGAATGTGACA 240
||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 CCCATTATTCCCGGGCATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGACA 240
Query 241 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCGAATCATGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCCAATCATGT 300
Query 301 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTGAAGTCGTTTTTACATACAACTCT 360
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 301 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTAAAGTCGTTTTCACATACAACTCT 360
Query 361 CGTTCCTCTGACGGAACCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTTCCTCTGACGGAACCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCAC 420
Query 421 CGCTTTGTCCTAAGCATTCCCGATGGTTTACCAAGCGATGCAGCCGCGCCGCTGCTCTGT 480
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 421 CGCTTTGTCCTAAGCATTCCCGACGGTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGT 480
Query 481 GCTGGAATTACTGTGTACAGTCCAATGAAATATTATGGTATGACTGAAGAATCAGGGAAA 540
|||||||| |||||||||||||| ||||| |||||||| |||||| ||||||||||||||
Sbjct 481 GCTGGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAA 540
Query 541 CATTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTGAAGATTGGTAAAGCC 600
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CGTTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCC 600
Query 601 TTTGGTTTAAGAGTTACTGTGATGAGTAGGTCATCAGAGAAAGAGAGGGAAGCTATTGAT 660
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 601 TTTGGTTTAAGAGTTACTGTGATTAGTAGGTCATCAGAGAAAGAGAGAGAAGCAATTGAT 660
Query 661 CGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGATGCAACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGAAGCAGTT 720
Query 721 GGAACTATGGATTTCGTTATCGATACCGTATCAGCAGAACATGCTCTATTACCGTTGTTT 780
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 721 GGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTACCTTTGTTT 780
Query 781 AGTTTGCTTAAAGTGAGTGGAAAGCTTGTGACTTTAGGCTTACCGGAGAAGTCACTCGAG 840
|||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||
Sbjct 781 AGTTTGCTTAAAGTGAGTGGAAAGCTTGTGGCTTTAGGCTTGCTGGAGAAGCCACTCGAC 840
Query 841 CTACCAATCTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGG 900
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGCCAATTTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGG 900
Query 901 ATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAATATCGTTTCGGATATT 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 ATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAATCGTTTCGGATATT 960
Query 961 GAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGCTAAATCTGATGTC 1020
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 GAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGTTAAATCTGATGTC 1020
Query 1021 AGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTAGTCACTGACTCATCAGCTGAGAAT 1080
|||||||||||||||||||||||||||||||||||| || |||| || |||||||||| |
Sbjct 1021 AGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTACTCCCTGAGTCGTCAGCTGAGATT 1080
Query 1081 TTAGA-GGATCATGTCGACCATGGAGTCTCAATCACGTCTAGATTCTGA 1128
||| | ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 TTA-ACGGAGCATGTCGACCATGGAGTCTCGATCACGTCTAGATTCTGA 1128
> AT2G21730.1 | Symbols: CAD2, ATCAD2 | cinnamyl alcohol dehydrogenase
homolog 2 | chr2:9280044-9281623 FORWARD LENGTH=1141
Length=1141
Score = 1759 bits (952), Expect = 0.0
Identities = 1073/1132 (95%), Gaps = 5/1132 (0%)
Strand=Plus/Plus
Query 1 ATGGTAGATCGAAATAAAGCATTTGGTTGGGCGGCCAACGACGAATCTGGCGTCCTCTCT 60
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 11 ATGGTAGATCAAAATAAAGCATTTGGTTGGGCGGCCAACGACGAATCGGGCGTCCTCTCT 70
Query 61 CCATTTCATTTCTCTAGAAGAGAAAATTGTGAGAACGATGTAACAGTGAAAATCTTGTTC 120
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 71 CCATTTCATTTCTCTAGAAGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTC 130
Query 121 TGTGGTGTTTGTCACTCTGATCTTCACACCATCAAAAACCACTGGGGAATCTCTCGTTAC 180
|||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||
Sbjct 131 TGTGGTGTTTGTCACTCTGATCTTCATACCATCAAGAACCATTGGGGATTCTCTCGTTAC 190
Query 181 CCCGTTGTTCCCGGGCATGAAATCGTTGGAATAGCTACAAAAGTTGGTAAGAATGTGACA 240
||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 191 CCCATTATTCCCGGGCATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGACA 250
Query 241 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCGAATCATGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 AAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCCAATCATGT 310
Query 301 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTGAAGTCGTTTTTACATACAACTCT 360
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 311 GAATCATGTAACCAAGACTTAGAAAACTATTGTCCTAAAGTCGTTTTCACATACAACTCT 370
Query 361 CGTTCCTCTGACGGAA-C--CAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGAT 417
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGTTCCTCTGACGGAACCAGCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGAT 430
Query 418 CACCGCTTTGTCCTAAGCATTCCCGATGGTTTACCAAGCGATGCAGCCGCGCCGCTGCTC 477
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 431 CACCGCTTTGTCCTAAGCATTCCCGATGGTTTACCAAGCGATTCAGGCGCGCCGCTGCTC 490
Query 478 TGTGCTGGAATTACTGTGTACAGTCCAATGAAATATTATGGTATGACTGAAGAATCAGGG 537
||||||||||| |||||||||||||| ||||| |||||||| |||||| |||||||||||
Sbjct 491 TGTGCTGGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGG 550
Query 538 AAACATTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTGAAGATTGGTAAA 597
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 551 AAACGTTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAA 610
Query 598 GCCTTTGGTTTAAGAGTTACTGTGATGAGTAGGTCATCAGAGAAAGAGAGGGAAGCTATT 657
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||
Sbjct 611 GCCTTTGGTTTAAGAGTTACTGTGATTAGTAGGTCATCAGAAAAAGAGAGAGAAGCAATT 670
Query 658 GATCGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGATGCA 717
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 671 GATCGGCTTGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGAAGCG 730
Query 718 ACAGGAACTATGGATTTCGTTATCGATACCGTATCAGCAGAACATGCTCTATTACCGTTG 777
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 731 GTTGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTACCGTTG 790
Query 778 TTTAGTTTGCTTAAAGTGAGTGGAAAGCTTGTGACTTTAGGCTTACCGGAGAAGTCACTC 837
||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||
Sbjct 791 TTTAGTTTGCTTAAAGTGAATGGAAAGCTTGTGGCTTTAGGCTTACCGGAGAAGCCACTC 850
Query 838 GAGCTACCAATCTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGA 897
|| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GACCTGCCAATTTTCTCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGA 910
Query 898 GGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAATATCGTTTCGGAT 957
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 911 GGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAATCGTTTCGGAT 970
Query 958 ATTGAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGCTAAATCTGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 ATTGAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGCTAAATCTGAT 1030
Query 1018 GTCAGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTAGTCACTGACTCATCAGCTGAG 1077
||||||||||||||||||||||||||||||||||||||| || |||| || |||||||||
Sbjct 1031 GTCAGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTACTCCCTGAGTCGTCAGCTGAG 1090
Query 1078 AATTTAGA-GGATCATGTCGACCATGGAGTCTCAATCACGTCTAGATTCTGA 1128
| |||| | ||| || || |||||||||||||| ||||||||||||||||||
Sbjct 1091 ATTTTA-ACGGAGCAGGTGGACCATGGAGTCTCGATCACGTCTAGATTCTGA 1141
> AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase
9 | chr4:18291218-18293383 FORWARD LENGTH=1744
Length=1744
Score = 765 bits (414), Expect = 0.0
Identities = 853/1058 (81%), Gaps = 57/1058 (5%)
Strand=Plus/Plus
Query 22 TTTGGTTGGGCG-GCCA-ACGACGAATCTGGCGTCCTCTCTCCATTTCATTTCTCTAGAA 79
|||||||||| | || | | ||| |||| || || |||||||| ||||| ||||||||||
Sbjct 90 TTTGGTTGGG-GTGCTAGA-GACAAATCCGGTGTTCTCTCTCCTTTTCACTTCTCTAGAA 147
Query 80 GAGAAAATTGTGAGAACGATGTAACAGTGAAAATCTTGTTCTGTGGTGTTTGTCACTCTG 139
|||| ||| |||| || ||||| |||||||| |||||||||||||| ||||| ||| |||
Sbjct 148 GAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTCTGTGGAGTTTGCCACACTG 207
Query 140 ATCTT-CACACCATCAAAAACCACTGGGGAATCTCTCG--TTACCCCGTTGTTCCCGGGC 196
|| || ||||||||||||||| ||||||| || |||| |||||| || ||||| ||||
Sbjct 208 AT-TTACACACCATCAAAAACGACTGGGG-AT-ACTCGTATTACCCAGTAGTTCCAGGGC 264
Query 197 ATGAAATCGTTGGAATAGCTACAAAAGTTGGTAAGAATGTGAC-AAAGTTTAAAGAAGGA 255
||||||||||||| || |||||||||||||||||||| ||||| ||| || |||||||||
Sbjct 265 ATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAA-TTCAAAGAAGGA 323
Query 256 GACCGAGTAGGAGTAGGCGTAAT-AATCGGTTCATGCGAATCATGTGAATCATGTAACCA 314
|| || || |||||||| || || | | || || ||| |||| || ||||| ||| ||||
Sbjct 324 GATCGTGTCGGAGTAGGAGTGATCAGT-GGCTCGTGCCAATCTTGCGAATCTTGTGACCA 382
Query 315 AGA-CTTAGAAAACTATTGTCCTGAAGTCGT-TTTTACATACAACTCTCG-TT-CCTCTG 370
||| ||| |||||||| |||||| || | || ||| |||||||| | || || || |
Sbjct 383 AGATCTT-GAAAACTACTGTCCTCAAAT-GTCTTTCACATACAA-T-GCGATTGGATCCG 438
Query 371 ACGGAACC-AGAAACCAAGGTGGTTATTCCGACGTA-ATTGTTGTCGATCACCGCTTTGT 428
| |||||| || || | ||||| ||||| || | | ||||| || ||||| || |||||
Sbjct 439 ATGGAACCAAG-AATTACGGTGGCTATTCGGA-GAACATTGTGGTTGATCAACGGTTTGT 496
Query 429 CCTAAGCATTCCCGATG-GTTTACCAAGCGATGCAGCCGCGCCGCTGCTCTGTGCTGGAA 487
| | |||| || | |||||| |||||| | | |||||| |||| ||||||||||
Sbjct 497 TTTGCGGTTTCCGGA-GAATTTACCGAGCGATTCGGGTGCGCCGTTGCTGTGTGCTGGAA 555
Query 488 TTACTGTGTACAGTCCAATGAAATATTATGGTATGACTGAAGAATCAGGGAAACATTTAG 547
| |||||||| ||||||||||| |||||||||||||||| || ||||||| |||||||
Sbjct 556 TCACTGTGTATAGTCCAATGAAGTATTATGGTATGACTG-AG--GCAGGGAAGCATTTAG 612
Query 548 GTG-TGAATGGACTTGGTGGACTTGGTCATATCGCTGTGAAGATTGGTAAAGCCTTTGGT 606
| | || |||||||||||| ||||||||| | ||||| |||||||||||||| ||||||
Sbjct 613 GGGTTG-CTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTTTGGT 671
Query 607 TT-AAGAGTTACTGTGATGAGTAGGTCATCAGA-GAAAG-AGAGGGAAGCTATTGATCGA 663
|| || ||||||||| || ||| || || | ||||| ||| |||||| ||| ||| |
Sbjct 672 TTGAA-AGTTACTGTCATTAGTTCTTCTTC-TACGAAAGCAGA-GGAAGCCATTAATC-A 727
Query 664 -CTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCA-AAAGATGAAGGATGCAACAG 721
|| |||||||||||||||||||| ||||| ||| |||| ||| ||||||| ||||| |
Sbjct 728 TCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAA-ATGAAGGCTGCAATTG 786
Query 722 GAACTATGGATTTCGTTATCGATACCG-TATCAGCAGAACATGCTCTATTA-CCGTTGTT 779
|||| ||||| | | ||||||||| || ||||||||| ||||||||| || |||||| |
Sbjct 787 GAACAATGGACTACATTATCGATA-CGATATCAGCAGTACATGCTCT-GTATCCGTTGCT 844
Query 780 TAGTTTGCTTAAAGTGAGTGGAAAGCT--TGTGACTTTAGGCTTACCGGAGAAGTCACTC 837
|||| || ||||| | |||||||| | || ||||||||||||| |||||| | |||
Sbjct 845 CGGTTTACTCAAAGTCAACGGAAAGCTCAT-TG-CTTTAGGCTTACCTGAGAAGCCTCTC 902
Query 838 GAGCTACCAATCTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCA-GATTGG 896
||||||||||| |||||||| |||||||||||||||||||| ||||||||| | | | ||
Sbjct 903 GAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTTGGAGGAAGTGACG-TGGG 961
Query 897 AGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAATATCGTTTCGGA 956
|||||||||||||||||||||||||||||| ||||| || ||||| || || | ||
Sbjct 962 AGGGATGAAGGAGACACAAGAGATGCTTGATTTCTGCGCTAAGCACAACATTACAGCTGA 1021
Query 957 TATTGAGCTCATAAAGATG-AGTGATATCAACTCTGCGATGGACCGT-TTGGCTAAATCT 1014
|||||| | || |||||| | ||| || ||| |||||||||| | ||| |||| |||
Sbjct 1022 TATTGAATTGATTAAGATGGA-TGAGATTAACACTGCGATGGAGAGGCTTG-CTAAGTCT 1079
Query 1015 GATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTC 1052
||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1080 GATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTC 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5