BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320032
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21850.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 2911 0.0
AT2G21840.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 239 1e-61
> AT2G21850.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:9315218-9318238 FORWARD LENGTH=2654
Length=2654
Score = 2911 bits (1576), Expect = 0.0
Identities = 2136/2402 (89%), Gaps = 56/2402 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAGC-CACAGCATTTCTCCCATGAATGCCTGTTGACTTCGCCAAAGATCGTCGC 59
|||||||||| || ||||||||||||||||||||| |||||||| || ||||||| ||
Sbjct 51 ATGGCAGAGCTCA-AGCATTTCTCCCATGAATGCCCATTGACTTCACCCAAGATCGCCGT 109
Query 60 CGAGGGGATTTGCAGCATTTGCTACAAAGATGAAGTCGTCGAGTTGGCATGTAGCCCTTG 119
||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 110 CGACGGGATTTGCAGCATTTGCTACAAAGATGACCTTGTCGAGTTGGCATGTAGCCCTTG 169
Query 120 CGAATTCAATCTTTGTAAAGCTTGCTCTCATGATCTGCCGCAGAAGGTGTCACACGATTT 179
||| |||| ||| ||||||| ||||||||| | || ||||||||||| | ||||||||
Sbjct 170 CGATTTCAGTCTCTGTAAAGGTTGCTCTCA--A-CTTCCGCAGAAGGTCTGGCACGATTT 226
Query 180 CCATCCGGATCATCCTCTAGAATTTTGTGTACATAAGTACGATCAGAAACCGGGATACAT 239
|||||||||||||||||| ||||||||| | || |||||||||||||||| | | || |
Sbjct 227 CCATCCGGATCATCCTCTGGAATTTTGTCTGCACCAGTACGATCAGAAACCTGAACACGT 286
Query 240 CGTCTGCTCCGGGTGTGGTAACATGTCTTCTGGTTCTTTCTACAAGTGTAAAGAGTGTGA 299
||| |||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 287 CGTATGCTCCGGGTGTGGCAACATGACTTCTGGCTCTTTCTATAAGTGTAAAGAGTGTGA 346
Query 300 GATCTATTTGGATC-TCGATTGTGCGCTCAGTGCGAACATCTTCAGGGGCTGGGGTGA-C 357
||| || ||||| | | | |||||||||| ||||| ||||||||||||||||| | | |
Sbjct 347 GATATACTTGGA-CATGGGCTGTGCGCTCATTGCGAGCATCTTCAGGGGCTGGGAT-AGC 404
Query 358 AAAGACTTTCTCCATTACAGCCATTGCCACTTGCTTAAGAGGTGTAGACCGGGACCAGAC 417
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 405 AAAGACTTGCTCCATTACAGCCATTGCCACTTGCTTAAGAGGTGTAGACCCGGACCAGAC 464
Query 418 GCTAGAGGTTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCCCTCTGCAATATGTTACGGT 477
||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 465 GCTAGAGGTTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCCCTCTTCCGTTTGTTATGGT 524
Query 478 TGCGTTCATTGTTACTCATTTGTTCACGAACGCTGTATTGATTTTCCGAGAGAGGTTGCA 537
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 525 TGCGTTCATTGTTACTCATTTGTTCACGAACGCTGTATTCATTTTCCGAGAGAGATTGCA 584
Query 538 CATCCTGTGCATCCTGCACACCCTCTCAAACGACTTGATTACACACGTTCTAGTCGCTGT 597
||||||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 585 CATCCTGTGCATCTTGCACACCCTCTCAAACGGCTTGATTACACACGAACTAGTCTCTGT 644
Query 598 GATATATGCGGGGAAA-TCATTGCCAGTATCCCATTTGGTTGTCTAGAATGCGTTTTTGA 656
||||||||||||||| | || || || ||||||||||||| |||||||||| ||||||
Sbjct 645 CATATATGCGGGGAAAGT-ATCGCTGGTGTCCCATTTGGTTGCCTAGAATGCGATTTTGA 703
Query 657 CGCTCATTTGAGGTGTTTAGATTC-TTTTCTGCGAGGTCTTATGCACAAGTCTCATCAGC 715
|||||| ||||||||||||||||| |||| ||||||| || |||||||||||||||| ||
Sbjct 704 CGCTCACTTGAGGTGTTTAGATTCCTTTT-TGCGAGGGCTGATGCACAAGTCTCATCCGC 762
Query 716 ACATGTTGATTTATAGAACTAAATCTTACATAAGTTTCACAGAAAACCATCAATGTCAAA 775
||| |||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 763 ACAGGTTGATTTATAGAACTAAATCTCACATAAGTTTCACAGAGAATGATCAATGTCAAA 822
Query 776 TATGCGGGAGATGTAATGAGATCTCTCTGGACTCttttttttACTGCATGGAATGCTGTA 835
||||| ||||| ||| || ||| ||||| |||||||||||||||||||| |||||| ||
Sbjct 823 TATGCAGGAGAAGTATTGTGATATCTCTTGACTCTTTTTTTTACTGCATACAATGCTCTA 882
Query 836 TGGTTTTCCATTTCGAGTGTCTTGAGATACCTGAGTTTGTGGTCGCCAAGTCTCATCACA 895
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 883 TGGTTTTCCATTTCGAGTGTCTTGAGATACCTGAGTTTGTGGTCGAGAAGTCTCATCACA 942
Query 896 TTCATCCACTTGTGTGCAAATTGCTCCCATATGAGGAAGAATTTTTGGAGTATTGTGGCG 955
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 943 TTCATCCACTTGTGTGCAAATTTCTCCCATATGAGGATGAATTTTTGGAGTATTGTGGCG 1002
Query 956 TTTGCGAGACAATGGTATATGCAGGACATCATGTTTATTCCTGTGAAGAATGTGGTTTTC 1015
|||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 1003 TTTGCGAGACAATGGTGTATGCAGGACATCATGCTTATTCCTGTGACGAATGTGATTTTC 1062
Query 1016 TGGGCCACATTGAATGCATTCTACGCAAGGAAGCGCCTTCCCCATTATACTTGAAAGATC 1075
| |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 1063 TAGGCCACATTGAATGCATTCTACGCAAGGCTGCCCCTTCCCCACTATACTTGAAAGATC 1122
Query 1076 TTTACGCTTGCAGCAAAGACAACACAAGTTCAACAAATCAAGAGGACCATGATACCAATG 1135
||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 1123 TTTACCCTTGCAGCAAAGACAACACTAGTTCAACATATCAACTGGACCATGATACCAATG 1182
Query 1136 AGCTAGAAA-CCAAACTTATGGTTAATAGTATGAAGGGGCATATTCATGTGATGAGATTC 1194
||| | ||| || |||||||||| |||| ||||||||||||||| ||||||||| |||||
Sbjct 1183 AGCCA-AAAGCCGAACTTATGGTCAATACTATGAAGGGGCATATACATGTGATGCGATTC 1241
Query 1195 GTTGATGTCAGTGAACTTGATGAAACTGCAAATTGCAACATATGTAAAACAAAAATACTT 1254
|||||| || |||| |||||||||| ||||| |||||||| ||| ||||||||||
Sbjct 1242 GTTGATTTCCGTGAGCTTGATGAAAAAGCAAAGTGCAACATCTGTCGGACAAAAATACGC 1301
Query 1255 AGTAGCCCATGTAAATGCGAGACATGCAGCTTCCAGGCGCATAATTTCTGCGCAGAGTTA 1314
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 1302 GGTAGCCCATGTAAATGCGAGACGTGCAGCTTCCAGGCGCATAGTTTCTGCGCAGAGCTA 1361
Query 1315 GGGCGATCATTGAAGCATCGAGTCCATAAGCATCCTT-TGACACTCTTGCCAGAGGCCCC 1373
|||||| |||||||||||||||| ||||||||| || |||||||||| ||||| |||||
Sbjct 1362 GGGCGACCATTGAAGCATCGAGTTCATAAGCATT-TTCTGACACTCTTACCAGATGCCCC 1420
Query 1374 TGCAGGTGCAGGGGTTACTATGAATTGCGACATTTGCACAAAGGATATCAAAGGGTTCAA 1433
|||||| ||| |||||||||||||| |||||||||| | | ||||| |||||||||||
Sbjct 1421 TGCAGGCACAGATGTTACTATGAATTGTGACATTTGCAGAGATGATATAAAAGGGTTCAA 1480
Query 1434 TCTCTTCTGTCGGC-TATGCAATTTTGTCATCCATACCAATTGCATATTTAAAGGTAAAC 1492
|||||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1481 TCTCTTTTGTCG-CATATGCAATTTTGTCATCCATACCAATTGCATATTTAGAGGTAAAC 1539
Query 1493 ATTTGTTTACGGAGTTACAAAGAGGGCAAAAAATCATTGGAAGCTGTAAAGGGATGATTA 1552
| || |||||||||| |||||| ||||||||||||||||||||||||| || ||||| |
Sbjct 1540 ACTTATTTACGGAGTCACAAAGGGGGCAAAAAATCATTGGAAGCTGTACAGCGATGAGTG 1599
Query 1553 GATGCATTCAAAAAGACCATTCGTTGGATCAAATTATGGTCTCAAAGTCGTATTCCATGG 1612
|||||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||
Sbjct 1600 GATGCATTCAAAAAGAGCATTTGTTGGATCAAATAATGGTCTCAAAGTCATACTCCATGG 1659
Query 1613 CTTGCGCTATATGTGAAGAGAAGGTGTGTGGAAAAGACAAGACCATACATATGTCATCGC 1672
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1660 CTTGCGATATATGTGAAGAGGTGGTGTGTGGAAAAGACAAGACCATACATATGTCATCGC 1719
Query 1673 TTATGCTTGCAACATTTGTGGAGCGTCTGATCAATCAAAGCTCACTTGTTTCATGTTTGG 1732
||| |||| ||||||||||| | |||||||||||| |||||||||||||||||||| |||
Sbjct 1720 TTAGGCTTTCAACATTTGTGTATCGTCTGATCAATGAAAGCTCACTTGTTTCATGTGTGG 1779
Query 1733 AGTGTGAAGATGTATATCATCCCCTGTGTGTGGAAGTTGAA-AGGCAAATAAGATTCTAT 1791
|||| |||||||||||||||| ||||| |||||||| || |||||||| ||||||| |
Sbjct 1780 TGTGTAAAGATGTATATCATCCATTGTGTCTGGAAGTT-AACAGGCAAATGAGATTCTGT 1838
Query 1792 CATCCACTTCATCCTGATCACAACCTTA-GAGTTTCATTTGTAAGTGGATCCAAGTGCAG 1850
|||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1839 CATCCAATTCATCCTGATCACTACCTTCCGC-TTTCATTTGTAAGTGGATCCAAGTGCCT 1897
Query 1851 AGCCTGCAGGCTGGAAATTAAAAAGTATGGCTATCATTGTTCCACTTGCGAA-ATCAGTT 1909
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1898 AGCCTGCAAGCTGGAAATTAAAAAGTATGGCTATCATTGTTCCACTTGC-AACATCAGTT 1956
Query 1910 TCCATATTAAATGCATCAAAGCTGTAAGATTGCCAAAAGAGATCAAGCCTCACAGCCACT 1969
||||||||||||||| |||||| |||| ||| ||| || ||| || | ||||| ||||
Sbjct 1957 TCCATATTAAATGCAGCAAAGCGGTAATATTTCCACAACAGA-CAT-C-TCACAACCACC 2013
Query 1970 ATTTCTATCACTTCTGGATTGCTGACTCGACGATCACTCGAACTTGCCGTGTGTGCGCTA 2029
|||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 2014 GTTTCTATCACTTTTGGATTGCTGACTCGAAGATCACTCGAACCTGCCGTGTGTGCGCTA 2073
Query 2030 GACCGTGCGGTGTGTCGTTCTACGGATGTATTAGTTGTGACTTCAACGCCCATGCGGAGT 2089
|||||||||||| |||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct 2074 AACCGTGCGGTGTCTCGTTCTACGGATGTATTGGGTGCGACTTCAACGCCCATGCAGAGT 2133
Query 2090 GTATTGGGTTTCCAT-CAAATGTGAAGAACCAAAAACATCAGCATACTCTCGTGGAAG-- 2146
|||||| ||||||| ||| ||||||||||||||||||| |||||||| | || |||
Sbjct 2134 GTATTGCGTTTCCAGACAA-TGTGAAGAACCAAAAACATGAGCATACT-T--TG-AAGCT 2188
Query 2147 AA-AG-TAATCGTG-TTT-G-GCCTAGTCTCTGCTCTCTCTGTGGAGAAAGTATCG-GGG 2200
|| || || |||| ||| | ||| || | |||| |||||||||||| |||| | |||
Sbjct 2189 AATAGGTAGTCGTTATTTCGAGCC-AGA-T-TGCTTTCTCTGTGGAGAGCGTATTGTGGG 2245
Query 2201 TTAGGAAACTACACGGAAGAAAATGCTCCAATGTGTTTTATTCATGCAAACACTGTGGTG 2260
| | || | | |||| ||| ||||||||||| ||||||||||||| ||||||||
Sbjct 2246 T-A--AAT-T-C--GGAA-AAA--GCTCCAATGTGCTTTATTCATGCAAGCACTGTGGCA 2295
Query 2261 ACGAGTTTCACCTCAAATGCATAATGTCTACGGATGACCGTGAAGCTGCAACAGAAGAGG 2320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 AAGAGTTTCACCTCAAATGCATAATGTCTACGGATGACCGTGAAGCTGCAACAGAAGAGG 2355
Query 2321 ATCAATTTGGAGACATCTATCTTATGTACCTTGAGCGTTATCTCTTGGAGCTGTTA-AAA 2379
|||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 2356 ATCAATATGGAGACATATATCTTATGTACCTTGAGCGTCATCTCTTGGAGGTGTTATAAA 2415
Query 2380 AG 2381
||
Sbjct 2416 AG 2417
> AT2G21840.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:9307060-9310058 REVERSE LENGTH=2654
Length=2654
Score = 239 bits (129), Expect = 1e-61
Identities = 434/576 (75%), Gaps = 41/576 (7%)
Strand=Plus/Plus
Query 25 CATGAATGCCTGTTGACTTCGCCAAAGATCGTCGCCGAGGGGATTTGCAGCATTTGCTAC 84
||||| ||| |||||| |||| ||||||||| | ||||| |||| ||| |||| |
Sbjct 41 CATGAGTGCGAGTTGACCTCGCGGGGGATCGTCGCAAACGGGATCTGCAACATCTGCTTC 100
Query 85 AAAGATGAAGTC-GTCGAGTTGGCATGTAG-CCCTTGCGAA-TTCAATCTTTGTAAAGCT 141
||||||||| | || || || || ||| | ||||||| || ||| |||| || ||||||
Sbjct 101 AAAGATGAA-CCTGTTGAATTCGCCTGT-GACCCTTGC-AATTTCGATCTCTGCAAAGCT 157
Query 142 TGCTCTCATGATCTGCCGCAGAAGGTGTCACACGAT-TTCCATCCGGATCATCCTCTAGA 200
|| |||| ||||| || ||||| |||||||| || || |||||||| || ||||||||
Sbjct 158 TG--CTCA-GATCTTCCCCAGAAAATGTCACACCATCTT-CATCCGGAGCACCCTCTAGA 213
Query 201 ATTTTGTGTA--CATAAGTACGATCAGAA-ACCGGGATACATCGTCTGC-TCCGGGTGTG 256
|||| || || | ||| | |||||||| | | | |||| || ||| | || ||| |
Sbjct 214 ATTTCGTATAGGC-GAAG-ATGATCAGAAGA-CTAAACACATGGTGTGCGT-CGTGTGCG 269
Query 257 GTAACATGTCTTCT-G-G-----TTCTTTCTACAAGTGTA-AAGAGTGTGAGATCTATTT 308
| |||||||||||| | | | || | ||| |||||| | ||||||||||||| |
Sbjct 270 GAAACATGTCTTCTGGAGCCAAATACTAT-TACGAGTGTAGCA-AGTGTGAGATCTACCT 327
Query 309 GGATCTCGATTGTGCGC-TCAGTGCGAACATCTTC-AGGGGCTGGGGTGACAAAGACTTT 366
||| | | ||||| | |||| |||||| | | | | |||| | |||||| |
Sbjct 328 CGATTTGGGCTGTGCACTTCAG-AAGAACAT-AGCGACGAGTTGGGAAGCCAAAGAAATG 385
Query 367 CTCCATTACAGCCATTG-CCACTTGCTTAAGAGGTGTAGACCGGGACCAGACGCTAGAGG 425
|||||||||||||| || ||||| ||||| |||||||| || |||||||| | | ||
Sbjct 386 CTCCATTACAGCCA-TGAACACTTACTTAAAAGGTGTAGGCCAGGACCAGATTCCAAAGA 444
Query 426 TTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCC--CTCTGCAATATGTTACGGTTGCGTT 483
||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 445 CTCTTGCCTTCTCTGTGAGC--AACCTCTCTCCTTCACTGCAATATGTTACGGTTGCGTT 502
Query 484 CATTGTTACTCATTTGTTCACGAACGCTGTATTGATTTTCCGAGAGAGGTTGCA-CATCC 542
|||||||||| ||| ||||||| || || ||||| | || | ||| || || |||||
Sbjct 503 CATTGTTACTTGTTTTTTCACGAGCGTTGCCTTGATCTACCAACCGAGATT-CAACATCC 561
Query 543 TGTGCATCCTGCACACCCTCTCAAACGACTTGATTA 578
||||||||| |||||||||||||| ||| ||||
Sbjct 562 CGTGCATCCTATGCACCCTCTCAAACGCCTTAATTA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118724288925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5