BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320036
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21900.1 | Symbols: WRKY59, ATWRKY59 | WRKY DNA-binding prot... 881 0.0
> AT2G21900.1 | Symbols: WRKY59, ATWRKY59 | WRKY DNA-binding protein
59 | chr2:9334149-9336222 REVERSE LENGTH=609
Length=609
Score = 881 bits (477), Expect = 0.0
Identities = 569/613 (93%), Gaps = 8/613 (1%)
Strand=Plus/Plus
Query 1 ATGAATTACCCTTCAAACCCTAACCCTAGTTCCACAGATTTCACTGAATTTTTCAAGTTC 60
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAACTATCCTTCAAACCCTAACCCTAGCTCCACAGATTTCACTGAATTTTTCAAGTTC 60
Query 61 GATGATTTTGACGATACTTTTCG-CATGATCATGGAAGAAATCGGCCGTGAGGACCACCA 119
||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 61 GATGATTTTGACGATACTTTT-GAGAAGATCATGGAAGAAATCGGCCGTGAGGACCA-C- 117
Query 120 ATCTTCGTCACCGACTTTGAGTTGGACTTCATCGGAAAAGTTAGTGGCCGCAGAAATCAC 179
|| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 118 -TCGTCGTCACCGACTTTGAGTTGGAGTTCATCGGAAAAGTTAGTGGCTGCAGAAATCAC 176
Query 180 AAGCCCGCTTCAAATAAACCAAGCTACCTCACCTATGAGCCTTGAAATAGGTGACAAAGA 239
|||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||
Sbjct 177 AAGCCCGCTTCAAACAAGCCTAGCTACCTCACCTATGAGCTTTGAAATAGGTGACAAAGA 236
Query 240 TGAGACCAAAAAGAGGAAGAGACACAAAGACGATCCGATTCTTCACGTGTTCAAAACG-A 298
||| | |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 237 TGAAATCAAAAAGAGGAAGAGACACAAAGAAGATCCGATTATTCACGTCTTCAAAACGAA 296
Query 299 A--ATCAGTTGATCAAAAAGTTGCTTTAGATGATGGATATAAATGGAGGAAGTACGGCAA 356
| |||| ||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 297 ATCATCAATTGATGAAAAGGTTGCTTTAGATGATGGGTATAAATGGAGGAAATACGGAAA 356
Query 357 GAAGCCGATAACGGGTAGTCCATTTCCAAGGCATTATCACAAGTGTTCGAACCCAGATTG 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 GAAGCCGATAACGGGTAGTCCATTTCCAAGGCATTATCACAAGTGTTCGAGCCCAGATTG 416
Query 417 CAACGTGAAGAAGAAGATCGAGAGAGATACCAACAATCCAGATTACGTATTGACAACGTA 476
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||
Sbjct 417 CAACGTGAAGAAGAAGATCGAAAGAGATACGAACAATCCAGATTACATATTGACAACATA 476
Query 477 CGAAGGAAGACATAACCACCCAAGCCCTTCTGTGGTTTATTGTGACTCAGACGACTTTGA 536
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 CGAAGGTAGACATAACCACCCAAGCCCTTCTGTAGTTTATTGTGATTCAGACGACTTTGA 536
Query 537 TCTTACCTCTCTCAACAATTGGTCCTTTCAGACGACAAATACGTATAGTTTCTCTCATTC 596
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 TCTTAACTCTCTCAACAATTGGTCCTTTCAGACGGCAAATACGTATAGTTTCTCTCATTC 596
Query 597 GGCTCCGTACTGA 609
||||| || |||
Sbjct 597 TGCTCCATATTGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5