BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320039
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9... 1227 0.0
> AT2G21940.4 | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9350716-9353231
FORWARD LENGTH=1542
Length=1542
Score = 1227 bits (664), Expect = 0.0
Identities = 848/932 (91%), Gaps = 31/932 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCAGCTATTGCTCAGAGGATTCGGTACCCATCATGGGTTGATTGGAG-AGAGTT 59
||||||||||||||| |||||||||||| ||||||||||||||||||||| || | || |
Sbjct 278 ATGGAAGCAGCTATTACTCAGAGGATTCAGTACCCATCATGGGTTGATTGTAGAAAAG-T 336
Query 60 TGAGGGGAAGTCGCTGCGTGGTTCATTGCGGTATCCTCAGCGA-GTGAAGGAAGAGAAAA 118
|||| | ||| ||| ||||||||||||||||||| |||||| | || |||| ||| | ||
Sbjct 337 TGAGTGTAAGCCGCAGCGTGGTTCATTGCGGTATTCTCAGC-AGGTTAAGGTAGATAGAA 395
Query 119 GGTTCAGAGGCCTTGCTTTGGCTCATTTGCAACCTG--A-AAG-AA-GA--AA--AAGAT 169
|||| ||||| ||| ||||||||| |||||||||| | ||| || || || ||||
Sbjct 396 GGTTTAGAGGTCTTTCTTTGGCTCGCTTGCAACCTGAAAGAAGAAATGATCAACGAAGAG 455
Query 170 CAGTTTCTTCAGAGGTTTTATGTTCTGATAACAACTCTTCA---GCGTTGTTGGAGGCAG 226
|||||||| ||| ||||| |||||||||||||| || ||| |||||||||||| | |
Sbjct 456 CAGTTTCTCCAGCGGTTTCCTGTTCTGATAACAATTCCTCAGGTGCGTTGTTGGAGACTG 515
Query 227 GAAGTGTTTATCCGTTTGATGAAGATCTAATTCTCAAGGCAACTTTGCAGAGAAAAGCTG 286
||||||||||||| ||||||||||| | ||||| | | |||||||||| |
Sbjct 516 GAAGTGTTTATCCATTTGATGAAGA--T-ATTCT-----C-A------AGAGAAAAGCAG 560
Query 287 AAGAGGTTAAACCGTTTTTGAATGGACGATCTATGTACCTTGTTGGAATGATGGGTTCTG 346
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 561 AAGAGGTTAAACCGTATTTGAATGGACGATCTATGTACCTTGTCGGAATGATGGGTTCTG 620
Query 347 GGAAAACAACCGTGGGAAAGTTAATGTCCAAAGTGCTTGGTTATTCCTTCTTTGACTGCG 406
|||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 621 GGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTGCG 680
Query 407 ACACTTTGATTGAGCAGGCGATGAATGGAACTTCTGTTGCAGAGATTTTTGTGCATCATG 466
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 681 ACACTTTGATTGAACAGGCGATGAATGGAACTTCTGTTGCAGAGATATTTGTTCATCACG 740
Query 467 GAGAGAAtttttttAGAGGAAAAGAGACCGATGCGCTTAAGAAGCTCTCTTCGATGTATC 526
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 741 GAGAGAATTTTTTTAGAGGAAAGGAGACCGATGCGCTTAAGAAGCTCTCTTCGAGGTATC 800
Query 527 AAGTTGTTGTTTCCACCGGTGGAGGTGCAGTTATAAGACCCATTAACTGGAAGTATATGC 586
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AAGTTGTTGTTTCCACAGGTGGAGGTGCAGTTATAAGACCCATTAACTGGAAGTATATGC 860
Query 587 ATAAAGGAATCAGCATTTGGCTAGATGTGCCTCTAGAAGCCTTAGCCCATAGAATCGCTG 646
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 861 ATAAAGGAATCAGCATTTGGCTAGATGTGCCTCTAGAAGCATTAGCCCATAGAATCGCTG 920
Query 647 CTGTTGGAACTGGTTCACGACCACTGTTACACGATGAATCAGGAGATGCATACTCAGTGG 706
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 921 CTGTTGGAACTGATTCACGACCACTGCTACACGATGAATCAGGAGATGCATACTCAGTGG 980
Query 707 CTTTCAAACGTCTCTCGACTATTTGGGATGAGCGCGGTGAAGCATACACAAATGCAAATG 766
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 981 CTTTCAAACGTCTCTCGGCTATTTGGGACGAGCGCGGTGAAGCATACACAAACGCAAATG 1040
Query 767 CCAGAGTCTCCTTGGAAAATATTGCAGCCAAGCGTGGCTATAAAGATGTCTCAGATCTCA 826
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1041 CCAGAGTCTCCTTAGAAAATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCA 1100
Query 827 CACCAACTGAAATCGCTATCGAGGCCTTTGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAG 886
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1101 CACCAACTGAAATTGCTATCGAGGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAG 1160
Query 887 AAACTATGGAGATCCCAGACGGCGACCTCTAA 918
||||||||||||||||||||||||||||||||
Sbjct 1161 AAACTATGGAGATCCCAGACGGCGACCTCTAA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5