BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320052
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22121.1 | Symbols: LCR35 | low-molecular-weight cysteine-ri... 361 2e-99
> AT2G22121.1 | Symbols: LCR35 | low-molecular-weight cysteine-rich
35 | chr2:9397864-9398259 FORWARD LENGTH=237
Length=237
Score = 361 bits (195), Expect = 2e-99
Identities = 223/237 (94%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGATATCATGTTCTTATTTCCTCGTACTCATACTTGTGGTCTCAGTTTTTTCA 60
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCCAAGATATCATATTCTTATTTCCTCGTACTCATGCTTGTGGTCTCAGTTTTTTCA 60
Query 61 GTAGTTGAGAAGGCTAAGGGAGATGGACGTTGTACTATAACCATTGATCCAAAAGCTCCA 120
|| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 61 GTGGTTGAGAAGGCTAAGGGAGATGGAAGTTGTACTATAATCATTGATCCAAAAGCTCCA 120
Query 121 TCATGTGACATTATTGAATGTCGCCTATCCTGCATAACGGAGTACAATGGAGTTGCAGAA 180
||||||||||||||| ||||||| ||||||||||| || || ||||||||| ||||||||
Sbjct 121 TCATGTGACATTATTCAATGTCGTCTATCCTGCATTACAGACTACAATGGACTTGCAGAA 180
Query 181 TGTATTGCATCCAAAATTGGTAGACCTCCTAATTGTGTATGTTCTTATGATTGTTAA 237
||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 181 TGTATTGCATCCAGAATTGGTAGTCCTCCTAATTGTGTATGTACTTATGATTGTTAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5