BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320057
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22150.1 | Symbols: | pseudogene, hypothetical protein | ch... 401 6e-111
> AT2G22150.1 | Symbols: | pseudogene, hypothetical protein |
chr2:9421683-9422858 REVERSE LENGTH=1176
Length=1176
Score = 401 bits (217), Expect = 6e-111
Identities = 258/278 (93%), Gaps = 1/278 (0%)
Strand=Plus/Plus
Query 578 AAACTGAGGCGAGGAGGTTTCATTTGTTCAAACCTGAATATGGAGTTCCATTATTTCAAC 637
|||||||||| |||||||||||||| |||||||||||||| ||||| || | ||||||||
Sbjct 399 AAACTGAGGCAAGGAGGTTTCATTTATTCAAACCTGAATACGGAGTGCCGTAATTTCAAC 458
Query 638 CGACGTCGGTGTTCTCAACGCCGACAACCGGATACATTTTCGATGGAGAACAATGTGTGT 697
| || |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 459 CCACATCGGTGTTCTCAACGCTGACAACCGGATACATTTTCGATGGAGAACAGTGTGTGT 518
Query 698 TTGGAATTGACATCTTCGTTGCTCAAACCTTCAAGGAATGGGAAGTTTTCTCCTTTGAAG 757
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 519 TTGGAATTGACATCTTCGTTGCTCAAACCTTGAATGAATGGGAAGTTTTCTCCTTTGAAG 578
Query 758 AAAACAT-AAAGACCCCATTTACACATGGAAACTCACCAAATTCTCAACTCTCTATAGTG 816
||||||| ||||| |||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 579 AAAACATCAAAGATCCCATTTACACATGGAAACTCAACAGATTTTCAACTCTCTATAGTG 638
Query 817 ACTCTTACACATCCGCCCCATTTTCTTCCGGAGGAAGT 854
|||||||||||||||||| |||||||| |||||||||
Sbjct 639 ACTCTTACACATCCGCCCTTTTTTCTTCTGGAGGAAGT 676
Score = 237 bits (128), Expect = 2e-61
Identities = 153/165 (93%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 990 AGTGGAGGGATGGCCTAATGCAACAACTAATAATAATGGATGGGGTTACGAGAAGTTTGT 1049
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1012 AGTGGATGGATGGCCTAATGCAACAGCTAATAATAATGGATGGGGTTTCGAGAAGTTTGT 1071
Query 1050 ATCACTTGCTGATCTTAAAGATGCATCTAAAGGTTTAGTGGTGGACGATGCGATTAAGGT 1109
| || |||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 1072 ACCATTTGCAGATCTTAAAAATGCATCTAAAGGTTTAGTGGTGGAAGATGCGCTCAAGGT 1131
Query 1110 TGAAGTCGAGTTCATTGGCTTCTCTAAAACA--GACTCCACCTTA 1152
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1132 TGAAGTCGAGTTCATTGGCTTCTCTAAAACACAGACTCCACCTTA 1176
Score = 196 bits (106), Expect = 3e-49
Identities = 131/143 (92%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 850 GAA-GTGTATCCAAATGGAGATGGTTATGGAAAGGGCAATTCATTGTCACTCTATTTGCT 908
||| || ||||||||||||||||||| || |||||||||||||| |||| |||||||| |
Sbjct 784 GAAGGTATATCCAAATGGAGATGGTTTTGTAAAGGGCAATTCATCGTCAGTCTATTTGTT 843
Query 909 GAGTGATTCTAATGAAAATGCTTATGTTCGAGCCAAGCTAAGAGTTCTGGACCAAATCCG 968
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 844 GAGCGAGTCTAATGAAAAGGCTTATGTTCGAGCCAAGCTAAGAGTTCTTGACCAAATCCG 903
Query 969 ATCCAACCACGTCGAGAAGCTAG 991
|||||||||||| ||||||||||
Sbjct 904 ATCCAACCACGTGGAGAAGCTAG 926
Score = 189 bits (102), Expect = 5e-47
Identities = 124/135 (92%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 443 ATGGTGCGAATGGTTATGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCG 502
|||| || | ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCTACTGGATACGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCA 60
Query 503 ATCCAAAGGATGTGTATGCAGAGGTCAAGTTCTTCGTCTACAACAGAGTCTACGACAAGT 562
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61 ATCCAAAGGATGTGTACGCAGAGGTCAAGTTCTTCGTCTACAACAGAATCTACGACAAAT 120
Query 563 ACTACACCTATCAAG 577
|||| ||||| ||||
Sbjct 121 ACTATACCTACCAAG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5