BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320059

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22150.1 | Symbols:  | pseudogene, hypothetical protein | ch...   237    7e-62


> AT2G22150.1 | Symbols:  | pseudogene, hypothetical protein | 
chr2:9421683-9422858 REVERSE LENGTH=1176
Length=1176

 Score =  237 bits (128),  Expect = 7e-62
 Identities = 153/165 (93%), Gaps = 2/165 (1%)
 Strand=Plus/Plus

Query  264   AGTGGAGGGATGGCCTAATGCAACAACTAATAATAATGGATGGGGTTACGAGAAGTTTGT  323
             |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  1012  AGTGGATGGATGGCCTAATGCAACAGCTAATAATAATGGATGGGGTTTCGAGAAGTTTGT  1071

Query  324   ATCACTTGCTGATCTTAAAGATGCATCTAAAGGTTTAGTGGTGGACGATGCGATTAAGGT  383
             | || |||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct  1072  ACCATTTGCAGATCTTAAAAATGCATCTAAAGGTTTAGTGGTGGAAGATGCGCTCAAGGT  1131

Query  384   TGAAGTCGAGTTCATTGGCTTCTCTAAAACA--GACTCCACCTTA  426
             |||||||||||||||||||||||||||||||  ||||||||||||
Sbjct  1132  TGAAGTCGAGTTCATTGGCTTCTCTAAAACACAGACTCCACCTTA  1176


 Score =  202 bits (109),  Expect = 2e-51
 Identities = 131/142 (92%), Gaps = 0/142 (0%)
 Strand=Plus/Plus

Query  124  AAGGTGTATCCAAATGGAGATGGTTATGGAAAGGGCAATTCATTGTCACTCTATTTGCTG  183
            ||||| ||||||||||||||||||| || |||||||||||||| |||| |||||||| ||
Sbjct  785  AAGGTATATCCAAATGGAGATGGTTTTGTAAAGGGCAATTCATCGTCAGTCTATTTGTTG  844

Query  184  AGTGATTCTAATGAAAATGCTTATGTTCGAGCCAAGCTAAGAGTTCTGGACCAAATCCGA  243
            || || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  845  AGCGAGTCTAATGAAAAGGCTTATGTTCGAGCCAAGCTAAGAGTTCTTGACCAAATCCGA  904

Query  244  TCCAACCACGTCGAGAAGCTAG  265
            ||||||||||| ||||||||||
Sbjct  905  TCCAACCACGTGGAGAAGCTAG  926


 Score =  191 bits (103),  Expect = 5e-48
 Identities = 119/127 (94%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  2    TGGTTATGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCGATCCAAAGGA  61
            ||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  11   TGGATACGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCAATCCAAAGGA  70

Query  62   TGTGTATGCAGAGGTCAAGTTCTTCGTCTACAACAGAGTCTACGACAAGTACTACACCTA  121
            |||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct  71   TGTGTACGCAGAGGTCAAGTTCTTCGTCTACAACAGAATCTACGACAAATACTATACCTA  130

Query  122  TCAAGGT  128
             ||||||
Sbjct  131  CCAAGGT  137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5