BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320067
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotrans... 2218 0.0
> AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase
| chr2:9457810-9460412 REVERSE LENGTH=1744
Length=1744
Score = 2218 bits (1201), Expect = 0.0
Identities = 1365/1442 (95%), Gaps = 19/1442 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAGAGCTCCGCCGCCGTCATTTCCGCCGCTTCCGCCGCCGGTAGAGTCGAA 60
||||| ||||||| || | ||||||||||||| ||| |||||||| | || || |||
Sbjct 116 ATGGCTTCTCAGAGTTCAGTCGCCGTCATTTCCTCCG---CCGCCGCCAG-AG-GT-GAA 169
Query 61 TCATTCCCAGATTCAAAGAACCCAATCGGGTCAGTTAGGTT-C--CAACCCCTTCGTCTC 117
|||||||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||
Sbjct 170 TCATTCCCAGATTCAAAGAAACCAATCGGGTCAGTTCGGTTCCAACAACCCCTCCGTCTC 229
Query 118 TCCCTCTCGTACTGTAAGTCAGGGAATATGTCATCTAGAATCTGTGCTATGGCCAAACCA 177
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 230 TCCTTCTCGTACTGTAAGTCAGGGAATATGTCATCTAGAATCTGCGCTATGGCCAAACCA 289
Query 178 AATGATGCTGAGACTCTGTCATCATCATCATCAGTAGATATGTCACTTAGCCCGCGAGTT 237
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 290 AATGATGCTGAGACTC--T--T--TCATCATCAGTAGATATGTCACTTAGCCCGCGAGTT 343
Query 238 CAATCCTTAAAACCTTCCAAGACTATGGTTATAACCGATCTTGCAGCTACTCTTGTTCAA 297
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 CAGTCCTTAAAACCTTCCAAGACTATGGTTATAACCGATCTTGCAGCCACTCTTGTTCAA 403
Query 298 TCCGGTGTTCCCGTTATCAGACTAGCTGCAGGAGAACCTGACTTCGACACTCCCAAAGTC 357
||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct 404 TCCGGTGTTCCGGTTATTAGACTAGCTGCGGGAGAACCCGATTTCGACACTCCCAAAGTC 463
Query 358 GTAGCTGAGGCCGGGGTCAATGCGATTCGACAAGGTTTCACTAGGTATACGTTAAATGCA 417
||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 464 GTAGCTGAGGCTGGGATCAACGCGATTCGAGAAGGTTTTACTAGGTATACGTTAAATGCA 523
Query 418 GGTCTTACAGAACTCAGAGAAGCGATATGTC-ACAAGTTAAAAGAGGAGAACGGATTGTC 476
||| ||||||||||||||||||| ||||||| | ||| ||||||||||||| ||||||||
Sbjct 524 GGTATTACAGAACTCAGAGAAGCAATATGTCGA-AAGCTAAAAGAGGAGAATGGATTGTC 582
Query 477 TTATGCTCCGGATCAGATCTTGGTTAGTAATGGAGCTAAACAAAGTCTCTTACAAGCAGT 536
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTATGCGCCTGATCAGATCTTGGTTAGTAATGGAGCTAAACAAAGTCTCTTACAAGCAGT 642
Query 537 GCTCGCAGTTTGTTCTCCTGGAGATGAAGTTATAATTCCTGCACCGTATTGGGTGAGTTA 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GCTTGCAGTTTGTTCTCCTGGAGATGAAGTTATAATTCCTGCACCGTATTGGGTGAGTTA 702
Query 597 CACAGAACAGGCGAGATTAGCTGATGCAACACCCGTGGTCATTCCTACCAAGATTTCTAA 656
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 703 CACAGAACAGGCGAGATTGGCTGATGCAACGCCCGTGGTTATTCCTACCAAGATTTCTAA 762
Query 657 TAATTTCTTGTTGGATCCAAAGGATCTTGAGTCTAAATTGACTGAAAAATCTAGACTT-T 715
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 763 CAATTTTTTGTTGGATCCAAAGGATCTTGAGTCTAAATTGACTGAAAAATCTAGACTTCT 822
Query 716 TAATTCTCTGCTCTCCTTCCAACCCTACTGGATCTGTTTACCCCAAGAGTTTGCTTGAAG 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 823 T-ATTCTCTGCTCTCCTTCCAACCCTACTGGATCTGTTTACCCCAAGAGTTTGCTCGAAG 881
Query 776 AGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCGGATGAAATATATG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCGGATGAAATATATG 941
Query 836 AACACATTATTTATGCACCGGCAACACACACAAGTTTTGCTTCTTTGCCTGACATGTATG 895
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 942 AACACATTATTTATGCACCTGCAACACACACAAGCTTTGCTTCTTTGCCTGACATGTATG 1001
Query 896 AAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACGGGTTGGAGGCTTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACGGGTTGGAGGCTTG 1061
Query 956 GATATCTTGCTGGTCCTAAGCATATAGTTGCAGCTTGCAGTAAATTACAAGGCCAGGTTA 1015
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1062 GATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTACAAGGCCAGGTTA 1121
Query 1016 GTTCAGGAGCTAGTAGCATTGCTCAAAAAGCAGGTGTTGCTGCACTTGGGTTAGGAAAAG 1075
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1122 GTTCAGGAGCTAGTAGCATTGCTCAGAAAGCAGGTGTTGCTGCGCTTGGGTTAGGCAAAG 1181
Query 1076 CTGGAGGAGAAACAGTTGCAGAGATGGTTAAAGCATATAGAGAACGACGAGATTTCTTGG 1135
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1182 CTGGAGGAGAAACGGTTGCAGAGATGGTTAAAGCTTATAGAGAAAGACGAGATTTCTTGG 1241
Query 1136 TTAAAAGCTTAGGTGAAATCGAAGGTGTTAAGATCTCTGAACCTCAGGGAGCTTTTTATC 1195
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TTAAAAGCTTAGGTGATATCAAAGGTGTTAAGATCTCTGAACCTCAGGGAGCTTTTTATC 1301
Query 1196 TGTTTATTGACTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATG 1255
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCTTTATTGACTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATG 1361
Query 1256 ATTCGTCATCTCTTGCATTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTG 1315
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 ATTCGTCGTCTCTTGCACTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTG 1421
Query 1316 ATGCTTTTGGAGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTAC 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1422 ATGCTTTTGGAGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTTC 1481
Query 1376 AAGCCGCAGTTGAGAAGATCAGAAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTGT 1435
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1482 AAGCAGCTGTTGAGAAGATCAGGAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTTT 1541
Query 1436 AA 1437
||
Sbjct 1542 AA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5