BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320077
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22370.1 | Symbols: | unknown protein; Has 127 Blast hits t... 1031 0.0
> AT2G22370.1 | Symbols: | unknown protein; Has 127 Blast hits
to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa
- 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr2:9500815-9502190 REVERSE
LENGTH=976
Length=976
Score = 1031 bits (558), Expect = 0.0
Identities = 626/660 (95%), Gaps = 0/660 (0%)
Strand=Plus/Plus
Query 1 ATGTCAATGGAGTGTGTGGTTCAAGGAATCATTGAGACACAGCATGTTGAAGCGCTTGAG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 113 ATGTCAATGGAGTGTGTGGTTCAAGGAATCATCGAGACACAGCATGTTGAAGCTCTTGAG 172
Query 61 ATTCTTCTTCAAGGTCTTTGTGGTGTTAAACGCGAACGTTTGAGAGTTCATGAGTTATGT 120
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 173 ATTCTTCTTCAAGGTCTTTGTGGTGTTCAACGCGAACGTTTAAGAGTTCATGAGTTATGC 232
Query 121 TTAAAAAGTGGCCCAAATCTTGGTGTTGTGTCTTCAGAAGTTAGGCTTTTATGTGATCTT 180
|||| ||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 233 TTAAGAAGCGGCCCAAATCTTGGAGTTGTGTCATCAGAAGTTAGGCTATTATGTGATCTT 292
Query 181 GATCAACCAGAACCCACATGGACGGTTAAACATGTTGGTGGTCCGATGAGAGGTGCAGGA 240
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 293 GATCAACCCGAACCCACATGGACGGTTAAACATGTTGGTGGTGCGATGAGAGGTGCAGGA 352
Query 241 GCTGATCAAATCTCTGTTATGGTTAGAACTATGATTGAAAGTAAAGTAAGCAAGAATGCT 300
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 353 GCTGATCAAATCTCTGTTTTGGTTAGAAATATGATTGAAAGTAAAGTAAGCAAGAATGCT 412
Query 301 TTGCGTATGTTCTATGCACTCGGTTACAAATTAGACCATGAACTTCTTAAAGTCGGATTC 360
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 413 TTGCGTATGTTCTATGCACTCGGTTACAAACTAGACCATGAGCTTCTCAAAGTCGGATTC 472
Query 361 GCCTTTCATTTCCAACGGACTGCGCACATTAGTGTTTCTGTATCTTCGGTTAATAAGATG 420
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 473 GCCTTTCATTTCCAACGGACTGCGCACATAAGTGTTTCTGTATCTTCTGTTAATAAGATG 532
Query 421 CCTAAAGTTCATGCTATAGATGAGGCAGTTCCTGTAACACCTGGGATGCAGATTGTTGAT 480
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 533 CCTAAAGTTCATGCTATAGATGAGGCTGTTCCTGTAACACCTGGTATGCAGATTGTTGAT 592
Query 481 GTTACAGCTCCAGCAACACCTGAGAATTACAGCGAAGTCGCTGCTGCGGTTTCATCTTTC 540
|| || ||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 593 GTAACTGCTCCTGCAACTTCTGAGAATTACAGTGAAGTCGCTGCTGCTGTTTCATCTTTC 652
Query 541 TGTGAATTTCTCGCCCCGCTTGTTCACTTGTCGAAACCGTTTATTTCCACTGGGGTTGTG 600
||||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 653 TGTGAATTTCTTGCTCCGCTTGTTCACTTGTCGAAACCGTCTATCTCCACGGGGGTTGTG 712
Query 601 CCAACCGCTGCTGCGGCTGCTGCATCTCTTATGTCGGATGGAGGAGGTACTACATTGTAA 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CCAACCGCTGCTGCGGCGGCTGCATCTCTTATGTCGGATGGAGGAGGTACTACATTGTAA 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5