BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320079
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509017-9511... 1607 0.0
> AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509017-9511231
FORWARD LENGTH=2215
Length=2215
Score = 1607 bits (870), Expect = 0.0
Identities = 965/1011 (95%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 750 GAAGCTTTTTGATGATATGGAAGAAAAGGATGTTGTGA-TGTGGAATGCCATGATCGGTG 808
||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||
Sbjct 1047 GAAGCTTTTTGATGATATGGAAGAAAAAGATGTTGT-ACTGTGGAATGCAATGATCGGTG 1105
Query 809 GATCAGTCCAAGCCAAGCGTGCTCAAGACGCTTTGGCATTGTTCCAGGAGATGCAAACAA 868
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GATCAGTCCAAGCCAAGCGTGGTCAAGACGCTTTGGCATTGTTCCAGGAGATGCAAACAA 1165
Query 869 GTAACAC-AGATCCTGACGAAATCACCATGATACATTGCCTATCTGCGTGTTCTCAGCTT 927
||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1166 GTAACACTA-AGCCTGACGAAATCACCATGATACATTGCCTATCTGCTTGTTCTCAGCTT 1224
Query 928 GGTGCTCTTGATGTTGGCATTTGGATTCATCGTTACATCGAGAAACACAGTCTTAGTCTC 987
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1225 GGTGCTCTTGATGTTGGCATTTGGATTCATCGTTACATCGAGAAATACAGTCTTAGTCTC 1284
Query 988 AATGTTGCGCTAGGAACTTCATTGGTCGACATGTACGCCAAATGTGGTAACATCTCAGAA 1047
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1285 AATGTTGCGCTAGGAACTTCATTGGTTGACATGTACGCCAAATGTGGTAACATCTCAGAA 1344
Query 1048 GCTCTCAGTGTTTTTCACGGAATTCAAACAAGAAACTCGCTTACATACACAGCGATAATC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 GCTCTCAGTGTTTTTCACGGAATTCAAACAAGAAACTCGCTTACATACACAGCGATAATC 1404
Query 1108 GGAGGTTTAGCTCTTCACGGAGATGCATCTACTGCTATATCATACTTTAACGAAATGATT 1167
||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1405 GGAGGTTTAGCCCTTCATGGAGATGCATCCACTGCTATATCATACTTCAACGAAATGATT 1464
Query 1168 GATGCAGGGATAGCCCCAGACGAAATCACTTTCATAGGGTTATTATCAGCTTGTTGCCAT 1227
||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 1465 GATGCAGGGATTGCCCCAGACGAGATCACTTTCATAGGACTATTATCAGCATGTTGCCAT 1524
Query 1228 GGTGGAATGATCCAAACCGGCCGTGATTATTTCTCTCAGATGAAGTCTAGATTTAACCTA 1287
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1525 GGTGGAATGATCCAAACAGGCCGTGATTATTTCTCTCAGATGAAGTCTAGATTCAACCTA 1584
Query 1288 AATCCTCAATTGAAACATTACTCTATAATGGTTGATCTTCTAGGGAGAGCCGGGCTATTG 1347
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1585 AACCCTCAATTGAAACATTACTCTATAATGGTAGATCTGCTAGGGAGAGCCGGGCTATTA 1644
Query 1348 GAAGAAGCGGACAAGCTCATGGAAAGTATGCCAATGGAGGCAGATGCTGCGGTTTGGGGA 1407
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GAAGAAGCAGACAGGCTCATGGAAAGTATGCCAATGGAGGCAGATGCTGCGGTTTGGGGA 1704
Query 1408 GCTTTATTATTCGGTTGCAGGATGCACGGAAATGTTAAGTTGGGAGAGAAAGCGGCTAAG 1467
|| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1705 GCATTATTATTCGGTTGCAGGATGCACGGTAATGTTGAGCTGGGAGAGAAAGCGGCTAAG 1764
Query 1468 AAGCTTCTCGAACTTGATCCAAGTGATAGCGGGATCTATGTGTTGTTGGATGGCATGTAT 1527
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1765 AAACTTCTCGAACTTGATCCCAGTGATAGCGGGATCTATGTGTTGTTGGATGGCATGTAT 1824
Query 1528 GGAGAGGCTAATATGTGGGACGATGCAAAGAGAGCGAGGAGGATGATGAACGAGAGAGGT 1587
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GGAGAGGCTAATATGTGGGAAGATGCAAAGAGAGCGAGGAGGATGATGAACGAGAGAGGT 1884
Query 1588 GTAGAGAAGATTCCTGGTTGTAGTTCCATTGAGGTTAACGGAATTGTCTCTGAGTTTATC 1647
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1885 GTAGAGAAGATTCCTGGTTGTAGTTCCATTGAGGTTAATGGAATTGTCTGTGAGTTCATC 1944
Query 1648 GTTAGAGATAAATCAAGACCGGAATCTGAGAAAATCTATGATTGCTTACATTGTCTTGGA 1707
||||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1945 GTTAGGGATAAATCGAGACCGGAATCTGAGAAAATTTATGATCGCTTACATTGTCTTGGA 2004
Query 1708 AGACATATGGGGAGCTCGTTGAGTGTACTATATTCGGAA-ATGAGATTACT 1757
|| |||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2005 AGGCATATGAGGAGCTCGTTGAGTGTACTATTTTCGGAATATGAGATTACT 2055
Score = 1098 bits (594), Expect = 0.0
Identities = 701/753 (93%), Gaps = 6/753 (1%)
Strand=Plus/Plus
Query 1 ATGGTAATCACTGGCTTGGTTCTAGACCCATTTGCTTCAAGCCGGTTAATTGCTTTCTGC 60
||| |||| | ||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 244 ATGATAATAAATGGTTTGATTCTGGACCCATTTGCTTCAAGCCGGTTAATTGCTTTCTGT 303
Query 61 GCATTATCGGAATCTCGGTATCTCAATTACTGTGTGAAGATTCTTAAAGGTATTGAGAAC 120
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 304 GCATTATCGGAATCTCGATATCTCGATTACTCTGTGAAGATTCTTAAAGGTATTGAGAAC 363
Query 121 CCTAATGCGTTCTCTTGGAATGTGACGATCAGAGGTTTCTCTGAGAGCGAGAATCCTAAA 180
||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct 364 CCTAACATATTCTCTTGGAATGTAACGATTAGAGGATTCTCTGAGAGTGAGAATCCTAAA 423
Query 181 G-ATGCGGTTTTGGC-CTATAAGCAGATGCTGAGACGTGGTTGTTGTGAGTCCAGACCGG 238
| || | ||||| || ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 424 GAAT-C-GTTTTTGCTCTATAAGCAGATGCTTAGACATGGTTGTTGTGAGTCCAGACCGG 481
Query 239 ATCATTTCACTTACCCGGTTTTGTTCAAGGTTTGTGCTGATCTTAGGTTGAATAGTTTAG 298
|||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 482 ATCATTTCACTTACCCTGTTTTGTTTAAGGTTTGTGCTGATCTTAGGTTGAGTAGTTTAG 541
Query 299 GTCACATGATTCTTGGGCATGTTTTTAAGCTGAGATTGGAATTGGTTAGTCATGTGCATA 358
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 542 GTCATATGATTCTTGGGCATGTTCTTAAGCTAAGATTGGAATTGGTTAGTCATGTGCATA 601
Query 359 ATGCGTCTATTCATATGTTTGCTTCTTGTGGTGAAATGGAAAATGCGAGGAAGGTGTTCG 418
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 602 ATGCGTCGATTCATATGTTTGCTTCTTGTGGTGATATGGAAAATGCGAGGAAGGTGTTCG 661
Query 419 ATGAAAGTCCTGTTAGGGATTTGGTTTCTTGGAATTGTTTGATTAATGGGTATAAGAAGA 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ATGAAAGTCCTGTGAGGGATTTGGTTTCTTGGAATTGTTTGATTAATGGGTATAAGAAGA 721
Query 479 TTGGGGAGGCAGAGAATGCGATAGAGGTATATAAGGTGATGGAATCTGAAGGAGTTAAGC 538
|||| ||||| ||||| |||||| | ||||||||| | ||||||||||||||||||||||
Sbjct 722 TTGGTGAGGCGGAGAAGGCGATATATGTATATAAGCTAATGGAATCTGAAGGAGTTAAGC 781
Query 539 CGGATGATGTGACGATGATTGGGTTGGTTTCTTCGTGTGCAATGTTGGGTGATTTGAATC 598
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 782 CGGATGATGTGACGATGATTGGGTTGGTTTCTTCGTGTTCAATGTTGGGAGATTTGAATC 841
Query 599 ATGGGAAAGAGTTTTATGAATACGTAAAAGCAAATGGACTGAGAATGACAATTCCTCTTG 658
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 842 GTGGGAAAGAGTTTTATGAATACGTAAAAGAAAATGGACTGAGAATGACGATTCCTCTTG 901
Query 659 CTAA-TGCTTTGATGGATATGTTTTCAAAATGCGGAGATATTCATGAGGCACGAAGAATA 717
||| |||||||||||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 902 -TAAATGCTTTGATGGATATGTTCTCGAAATGCGGAGATATTCACGAGGCACGAAGGATA 960
Query 718 TTTGATAACTTGGAAAAGAGAACAATTGTGTCG 750
|||||||||||||||||||||||||||||||||
Sbjct 961 TTTGATAACTTGGAAAAGAGAACAATTGTGTCG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5