BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320100
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22630.1 | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9... 981 0.0
> AT2G22630.1 | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621957
FORWARD LENGTH=901
Length=901
Score = 981 bits (531), Expect = 0.0
Identities = 635/686 (93%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGGGAAGACTGTGATCCAGAAGATCGATGATTCAACGAGTAGGCAAGTCACT 60
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGGAGAGGGAAGATTGTGATCCAGAAGATCGATGATTCCACGAGTAGACAAGTCACT 60
Query 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTCGCTATTCTCTGCGAC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTTGCTATTCTCTGCGAC 120
Query 121 GCCGAGGTCTGTCTCATCATTTTCTCCAGTACCGACAAGCTCTATGACTTTGCCAGCTCC 180
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 GCCGAGGTCTGTCTCATCATTTTCTCCAACACTGACAAGCTCTATGACTTTGCCAGCTCC 180
Query 181 AGTGTGAAATCTACTATTGAACGATTCAATACGACCAAGATGGAGCAGCAACAACTACTC 240
||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |
Sbjct 181 AGTGTGAAATCTACTATTGAACGATTCAATACGGCTAAGATGGAGGAGCAAGAACTAATG 240
Query 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300
Query 301 CACTCGCTGCAAGAAAATCATCGGCACCTAACGGGAGAGCAATTAAATGGTTTGAGCGTT 360
||||| ||||||||||| ||||||| |||||||||| | ||||||||||||||||||||
Sbjct 301 CACTCATTGCAAGAAAATTATCGGCAACTAACGGGAGTGGAATTAAATGGTTTGAGCGTT 360
Query 361 AAGGAGTTACGCAATC-TCGAGAGCCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419
|||||||||| || | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAGTTACAAAA-CATAGAGAGTCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419
Query 420 AAGAGAACATATTTTGACCAATGAAATCAAAGAACTAACCAGAAAGAGGAGTCTTCTTCA 479
||| ||||| ||||||||||||||||| ||||| |||||||||||||||| |||| ||||
Sbjct 420 AAGGGAACAAATTTTGACCAATGAAATTAAAGAGCTAACCAGAAAGAGGAATCTTGTTCA 479
Query 480 TCATGAAAACCTCGAGATA-TCGAGAAAAGTGCAAAGGATTCATCAAGAAAATGTCGAAC 538
||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 TCATGAAAACCTCGA-ATTGTCGAGAAAAGTACAAAGGATTCATCAAGAAAATGTCGAAC 538
Query 539 TATACAAGCAGGTTTATGCAACGTCAAACACAAACGGATTGGGACACCATGAGCTAGTGG 598
|||||||| ||| ||||| |||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 539 TATACAAGAAGGCTTATGGAACGTCGAACACAAATGGATTGGGACATCATGAGCTAGTAG 598
Query 599 ATGGAGCCAATGAATCCCTTGTAGAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658
||| || ||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGCAGTTTATGAATCCCATGCACAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658
Query 659 ATTATGAGACTTCTTCAAACAGCTAA 684
||||| |||| |||||||||||||||
Sbjct 659 ATTATAAGACATCTTCAAACAGCTAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5