BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320107
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22730.1 | Symbols: | Major facilitator superfamily protein... 2307 0.0
> AT2G22730.1 | Symbols: | Major facilitator superfamily protein
| chr2:9660964-9664133 FORWARD LENGTH=1694
Length=1694
Score = 2307 bits (1249), Expect = 0.0
Identities = 1374/1434 (96%), Gaps = 10/1434 (1%)
Strand=Plus/Plus
Query 5 TGGTCACCAAAGAAGAAGATTGTCTTCCTCCTGCGACGGAG---ACGCCGAGATGTTATT 61
|||| ||||||||||||||||| |||||||||| |||||| ||| ||||||||||||
Sbjct 2 TGGTGACCAAAGAAGAAGATTGCCTTCCTCCTGTAACGGAGACCACGTCGAGATGTTATT 61
Query 62 CTCCTTCATCTACTACTCCTCTTGCGGAGTTAGAGACTGTTCGAAGCATAGAAATCGTCG 121
|| |||| ||| ||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 62 CTACTTCTTCTTCTACTCCCCTTGCGGAGTTAGAGACTGTCCGAAGCTTAGAAATCGTCG 121
Query 122 AA---TCTTCCTTTCTCTCTCCCGTTTGGTTACTAGTGATCTTTTGCATCATTAACTTGT 178
|| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 122 AATCTTCTTCCTCTCTCTCTCCCGTTTGGTTACTGGTGATCTTTTGTATCATTAACTTGT 181
Query 179 TAAACTACATGGATCGTGGTGCGATAGCGAGCAACGGTGTCAATGGAAGTACCAGGAGTT 238
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 182 TAAACTACATGGATCGTGGTGCGATAGCGAGCAATGGTGTCAATGGCAGTACCAGGAGTT 241
Query 239 GTAATGATAAAGGCAAATGCACTCTTGCAACTGGAATTCAGGGACATTTTAACCTAAGTA 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GTAATGATAAGGGCAAATGCACTCTTGCAACTGGAATTCAGGGACATTTTAACCTAAGTA 301
Query 299 ATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAA 361
Query 359 TCTTTGCTTCATTGGCAAAAAGACTTATTGGAGTAGGTTTAACTGTTTGGACTATTGCAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCTTTGCTTCATTGGCAAAAAGACTTATTGGAGTAGGTTTAACTGTTTGGACTATTGCAG 421
Query 419 TTCTTGGTTGTGGCAGTTCCTTTGCCTTTTGGTTTATCGTCTTATGTCGTATGTTCGTTG 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTCTTGGCTGTGGCAGTTCCTTTGCCTTTTGGTTTATCGTCTTATGTCGTATGTTCGTTG 481
Query 479 GTGTAGGTGAAGCTTCTTTCATTAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTGTAGGTGAAGCTTCTTTCATTAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTC 541
Query 539 AAAAACAGAAAGCTGCATGGCTTGGACTGTTTTACATGTGTATACCAAGTGGTGTTGCTC 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAGAACAGAAAGCTGCATGGCTTGGACTGTTTTACATGTGTATACCAAGTGGTGTTGCTC 601
Query 599 TTGGTTATGTCTATGGCGGATATGTCGGAAAACATTTTAGTTGGCGCTATGCGTTTTGGG 658
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 602 TTGGTTATGTCTATGGCGGATACGTAGGAAAACATTTTAGTTGGCGGTATGCGTTTTGGG 661
Query 659 GTGAAGCTGTTTTAATGGCTCCATTTGCTGTCCTTGGTTTTTTAATGAAACCTTTGCAGT 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 662 GTGAAGCTGTTTTAATGGCTCCATTTGCTGTTCTTGGTTTTTTAATGAAACCTTTACAGT 721
Query 719 TAAAAGGCTCAGAGACATCGAAAAACAACAATCGTCTTCAGGTTGGTAATGAGATTGAGC 778
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 722 TAAAAGGATCAGAGACATTGAAAAACAACAATCGTCTTCAGGTTGATAATGAGATTGAGC 781
Query 779 ATG-CTCAGTTTGAGGTCTCAATTGAAACTAGCAAGTCAAGTTACGCGAACGCGGTTTT- 836
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 ATGAC-CAGTTTGAGGTCTCAATTGAAACTAGCAAGTCAAGTTATGCGAACGCGGTTTTC 840
Query 837 AAATTCATTTACTGGATTTGCAAAAGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGT 896
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAT-CATTTACTGGCTTTGCAAAAGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGT 899
Query 897 TGTTAATGTCTTAGGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTTAATGTCTTAGGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGG 959
Query 957 ACCAAAGGCGGGTTATAATATTTATAAGATGAAAAACGCGGATATGATCTTCGGGGCAGT 1016
||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 960 ACCAAAGGCTGGTTATAACATTTATAAAATGAAAAACGCAGATATGATCTTTGGGGCAGT 1019
Query 1017 AACTATCATTTGTGGGATCGTTGGAACATTATCAGGAGGCTTTTTACTTGATCGCGTCAC 1076
||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 1020 AACTATCATTTGTGGGATCGTTGGAACATTATCAGGAGGCTTTATACTTGATCGTGTTAC 1079
Query 1077 TGCGACAATTCCAAATGCTTTTAAGCTCTTATCCGGAGCAACATTTCTCGAGGCGGTATT 1136
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 TGCTACAATTCCAAATGCTTTTAAGCTCTTATCCGGAGCAACATTTCTCGGGGCGGTATT 1139
Query 1137 TTGCTTCACTGCATTTACCCTGAAGAGTTTATACGGTTTCATCGCTCTGTTTGCCTTAGG 1196
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1140 TTGCTTCACTGCATTTACCCTGAAGAGTTTATACGGTTTCATCGCTCTCTTTGCTTTAGG 1199
Query 1197 AGAGCTTCTTGTGTTTGCAACACAGGCTCCTGTGAATTATGTGTGTTTGCATTGTGTGAA 1256
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1200 AGAGCTTCTTGTGTTTGCTACACAGGCTCCTGTAAACTATGTGTGTTTGCATTGTGTGAA 1259
Query 1257 ACCAAGTTTACGACCATTATCAATGGCTATCTCCACCGTCGCAATTCACATATTCGGCGA 1316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGA 1319
Query 1317 TGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGGATCATATCAACAGTTGGAGAAAAAC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGGATCATATCAACAGTTGGAGAAAAAC 1379
Query 1377 GGCGTTGATTCTTACATCGATTCTGTTCTTAGCTGCTGCAATATGGCTTATAGG 1430
| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1380 CACACTGATTCTTACATCGATTCTGTTCTTAGCTGCTGCAATATGGTTTATAGG 1433
Score = 141 bits (76), Expect = 2e-32
Identities = 89/95 (94%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 1428 AGGGATATTCATAAACAGTGTAGATCGGTTTAATCAAGAAGAAACTGGAAGTGAGAACCC 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 AGGGATATTCATAAACAGTGTAGATCGGTTTAATCAAGAAGAAACTGGAAGTGAGAACCC 1579
Query 1488 AAGGAGGCAAGAACTATCGAT-TCTAACTCCATAA 1521
||||||| ||| |||||| | || ||||||||||
Sbjct 1580 GAGGAGGCCAGAGCTATCG-TCTCGAACTCCATAA 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5