BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320116
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22807.1 | Symbols: | Defensin-like (DEFL) family protein |... 392 8e-109
> AT2G22807.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:9715085-9715983 FORWARD LENGTH=282
Length=282
Score = 392 bits (212), Expect = 8e-109
Identities = 248/265 (94%), Gaps = 3/265 (1%)
Strand=Plus/Plus
Query 9 AGCTGCAAATGATTTCGGTTTCATCACTTGCTTGGTGATTTTCTTGGTGCTAACAGGAAT 68
|||| | |||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 21 AGCTACGAATGATTTTGGTTTCATCACTTGCTTGGTGATTTTCTTGGTGTTAGCAGGAAT 80
Query 69 ATCAAATGGAATGAGAATGACTCAGAAGGTGTCGTGTATAGAAGGTCGAACCTTATGGGC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ATCAAATGGAATGAGAATGACTCAGAAGGTGTCGTGTATAGAAGGTCGAACCTTATGGGC 140
Query 129 GAGGCGGCATCTTAAGTTTTTATATTGTAGTAGTACTCTATGTGAAGATAATTGCATTAA 188
||||| | || ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 141 GAGGC--C-TCCTAAGTTTTTTTATTGTAGTTCTACTCTATGTGAAGATAATTGCATTAA 197
Query 189 TACTGGTGCTTATAGAAGCGGCACATGTGACATTGAGAACGAAGTGGCAATATGCAGATG 248
|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 198 TACTGGTGCTTATAGAGGCGGCACATGTGACATGGAGGACGAAGTGGCAATATGCAGATG 257
Query 249 TCATCGTTGTAAAATGATGATATAG 273
|||||||||||||| ||| ||||||
Sbjct 258 TCATCGTTGTAAAAAGATAATATAG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5