BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320149
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23240.1 | Symbols: | Plant EC metallothionein-like protein... 427 2e-119
> AT2G23240.1 | Symbols: | Plant EC metallothionein-like protein,
family 15 | chr2:9895855-9896325 REVERSE LENGTH=398
Length=398
Score = 427 bits (231), Expect = 2e-119
Identities = 250/259 (97%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACACAGGCAAAGGAAGCT-CAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGACACAGGCAAAGGAAG-TGCAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59
Query 60 TTCTCCATGTCCCGGTGGTGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTCCATGTCCCGGTGGCGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119
Query 120 GGATCAAGAGCATAACACGTGTCCGTGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 GGATCAAGAGCACAACACGTGTCCATGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179
Query 180 TCCCAAGACCCAAACTCAAACCTCTACTAAGGGTTGCACTTGTGGTGAGGGATGCACCTG 239
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 180 CCCCAAGACTCAAACTCAAACCTCTGCTAAGGGTTGCACTTGTGGTGAGGGCTGCACCTG 239
Query 240 TGCCACTTGCGCTGCTTAG 258
|||||||||||||||||||
Sbjct 240 TGCCACTTGCGCTGCTTAG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11762653266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5