BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320173
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23530.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 2158 0.0
> AT2G23530.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 | chr2:10020652-10022864 REVERSE LENGTH=1719
Length=1719
Score = 2158 bits (1168), Expect = 0.0
Identities = 1528/1695 (90%), Gaps = 52/1695 (3%)
Strand=Plus/Plus
Query 1 ATGCTCACCATGAGAACCAAAGCACAAGATTCAACACCCAAAACAAACCCTACCCCAGTA 60
||||||||||||||||| |||||||||||||| ||| ||| ||||||||| || | |
Sbjct 61 ATGCTCACCATGAGAACTGAAGCACAAGATTCAGTACCTAAATCAAACCCTAATCCGGAA 120
Query 61 TTAATCAATGAAACCCCAAAGGTCTCTCTTTACGAACAATGCAGAGAAGAGAGGATCAAA 120
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTAATCAAAGAAACCCCAAAGGTCTCTCTTTACGAACAATGCAGGGAAGAGAGGATCAAA 180
Query 121 GAGAATCTTCAGAGGATGCAA-AATTTGGGTATCTTGAATCTCTCTCGCAAACTCAAACC 179
|||||||||||||||||| || ||| ||||| |||| |||||||||||||||||||||||
Sbjct 181 GAGAATCTTCAGAGGATG-AACAATCTGGGTCTCTTAAATCTCTCTCGCAAACTCAAACC 239
Query 180 CCAGACCCGACCCGTTAAAAGATCTTATGGTAACCCTAATTCCT-CTCAGAATCCGACTC 238
| ||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct 240 CAAGACCCGACCCGTTAAAAGATCTTACGGTAACCGTAATT-CTGTTCAGAATCCGACTC 298
Query 239 CTCCTCTTCAGCCTTCTCGTCGATCTTCTCGATTGGAGAACACAACTCCAGTAATCTACA 298
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CTCCTCTTCAGCCTTCTCGCCGATCTTCTCGATTGGAGAACACAACTCCAGTTATCTACA 358
Query 299 CTGATGGGATCTATGAGAAGGGTAAGAAAACATCTAAACGAGAGAGTGTGGTGGTGATTG 358
||||||||||| |||||||||| |||||| ||||||||||||||||||| | |||||||
Sbjct 359 CTGATGGGATCAATGAGAAGGGCAAGAAAGCATCTAAACGAGAGAGTGT--T-GTGATTG 415
Query 359 GTGAAGGGATAAGAGCCGAGATTTACACAGAGGAACATGAGAAGCTTCTTGGGAATACAG 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTGAAGGGATAAGAGCTGAGATTTACACAGAGGAACATGAGAAGCTTCTTGGGAATACAG 475
Query 419 AACGAAGCTGGACTTGTTTTGTTGATGGTTATGATAAGAATGGTAAACGGATTTATGATC 478
|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 476 AAAGAAGCTGGACTTGTTTTGTTGATGGCTATGATAAGAATGGGAAACGGATTTATGATC 535
Query 479 CGTTTAACGGTAAGACTTGTCATCAATACAGGCAGAAAACGATGGGATATCGTACACAGT 538
|||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 536 CGTTTAACGGTAAGACTTGTCACCAATGCAGGCAGAAGACGATGGGGCATCGTACACAGT 595
Query 539 GCAGCGAATGCAACCTGGTTCAAGGACAATTCTGTGGAGATTGTTTGTTCATGAGATATG 598
|||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 596 GCAGTGAATGCAATTTGGTTCAAGGACAGTTCTGTGGTGATTGTTTGTTCATGAGATATG 655
Query 599 GTGAACATGTGCTTGAAGCTCTTGAGAATCCAAACTGGATTTGTCCTGCTTGTCGGGGGA 658
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 656 GTGAACATGTGCTTGAAGCTCTTGAGAATCCAGACTGGATTTGTCCCGCTTGTCGCGGGA 715
Query 659 TTTGCAATTGCAGCTTGTGCCGGAATAATAAAGGATGGGTTCCAACTGGCCCGATTTACA 718
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCTGCAATTGCAGTTTGTGCCGGAATAATAAAGGATGGGTTCCAACTGGCCCGATTTACA 775
Query 719 GAAGGATAGCTGCACTTGGGTATAAGTCTGTAGCACATTATCTGATTCAAACCAAACGGG 778
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 GAAGGATAGCTGCACTTGGGTATAAGTCTGTGGCACATTATCTGATTCAAACCAAACGGG 835
Query 779 CGCAAACTCAAGATGCAGCCCCAAATCAAGCTTCTGCAAAGAGATCACTTTCCTTTCAAG 838
||| |||| | || || | |||| |||||| ||||||||||||||||||||||||||||
Sbjct 836 CGCCAACTGATGACACAACACCAAGTCAAGCGTCTGCAAAGAGATCACTTTCCTTTCAAG 895
Query 839 GAATGATTGCTGATGATGAAGAAGTACCAACGCTTGAGAATGATGATTCCTTGCAGAAAG 898
|| |||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 896 AAAAGATTGCTGGTGATGAAGACGTACCAATGCTTGAGAATGATGATTCCTTACAGAAAG 955
Query 899 AGGAAGATGAAAACACAAACGAAAATCAGAATGGTGATCTCCCTGAAGAAGTACAAAAGC 958
| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 956 AAGAAGGTGAAAACACGAACGAAGATCAGAATGGTGATCTCCCTGAAGAAGTACAAAAGG 1015
Query 959 TTCAGAATATCGAAAATCAGAGTGGTGATTCCTTGAAGAAAGAGGAGGATGAGACTCCAA 1018
|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1016 TTCAGAATATGGAATGTCAGAGTGGTGGTTCCTTGAAGAAAGAGGAGGATGAGACACCAA 1075
Query 1019 ATTCAGCTAGAAGGTCACTGAGCTTCTTATTGCCTTCTGTTGA---TGATCAAACTTCGT 1075
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1076 ATTCAGCTAGAAGGTCACTGAGCTTCTTATTGCCTTCTGTAGAGGATGATCAAACTTCAT 1135
Query 1076 TCGTGGATGTTCAGGTCTTAAGTTGTCTTGAGCCACCAAAGCAAGAACATTCATGTGCCC 1135
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1136 TGGTGGATGTTCAGGTCTTAAGTTGTCTTGTGCCACCAAAGCAAGAACATTCATGTGCAC 1195
Query 1136 ACAATGGTGATGATCTTCCAGA-AGTTCGGGAAAAGATAGGACGAA-ACTCGAATTTGGA 1193
|||||||||||||||||||||| | ||| ||||| |||||||| || |||| ||||||||
Sbjct 1196 ACAATGGTGATGATCTTCCAGATA-TTCAGGAAAGGATAGGAC-AACACTCAAATTTGGA 1253
Query 1194 GATGCTACCAGATAGCGACTTGCTTCCTGTAGATGATCAGACTCCATTTGTTAATGTTCA 1253
|| | |||||||||| ||||||||| ||| ||||| |||| |||||| ||| |||||||
Sbjct 1254 GACGAAACCAGATAGCTACTTGCTTCATGTGGATGAGCAGATTCCATTGGTTGATGTTCA 1313
Query 1254 GGTCTTGAGTTATCTTGAGACGCCAAAGCAGGATAAACAAGAACATTCATGTGCCCACAG 1313
|||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1314 GGTCTTGAGTTATCTTGAGACGCCGAAGCA--A-------GAACATTCATGTGCCCACAT 1364
Query 1314 TGGTGATGATCTTCCAAAAATTCAAAAATGGACAGGACAAGACCCGAATT-TGGAGACAA 1372
|||||||| |||||||||||||||| |||||| |||||||||||||| || || ||||||
Sbjct 1365 TGGTGATGGTCTTCCAAAAATTCAAGAATGGATAGGACAAGACCCGACTTCTG-AGACAA 1423
Query 1373 GACCAGTTGGCTACTTGATTCCTAT-G--GATGATCAAACTCCATTGGTGGATGCACAGG 1429
||||||| |||||||||||||||| | |||||||||||| ||||||||||||| ||||
Sbjct 1424 AACCAGTTAGCTACTTGATTCCTATAGATGATGATCAAACTTCATTGGTGGATGCGCAGG 1483
Query 1430 TCTTGAGTTATCTTGAGACGCCAAAGCAGGATAAACAAGAACATTCATGTGCCCACATTG 1489
|| || | |||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1484 TCATG--T-ATCTTGAGACACCAAAGCAAGATAAACAAGAACATTCATGTGCCCACATCG 1540
Query 1490 ATGATGATCTTCCAGAAATAGAAGAAGGGACAGGACAAGATTCGAATTTGGAGACAAGTT 1549
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 1541 GTGATGATCTTCCAGAAATTCAACAAGGGACAGGACAAGACTCGAATTTGGAGACAAGAC 1600
Query 1550 TTGGGGAAAGTCAGACCGTTGTTGTCAAAGCTCAGAACGAGTCAGTGAGTACTCGAGTAA 1609
||||||||||||||||| |||| | | ||| || | | | | ||||||
Sbjct 1601 TTGGGGAAAGTCAGACCCTTGT-G-----G-TCA-AA-G---C--T-----C--GAGTAA 1639
Query 1610 CGAGAAGTAAGAGGAAAGCGGCTCTGGAACCTAATCCAAATAGCATTGGTGGAAGACTAA 1669
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1640 CGAGAAGTAAGAGGAAAGCGGCTCTAGAACCAAATCCAGATAGCATTGGTGGAAGACTAA 1699
Query 1670 GGCAGCGTCGAAGGA 1684
||||||| ||||||
Sbjct 1700 GGCAGCGAAGAAGGA 1714
Score = 279 bits (151), Expect = 4e-74
Identities = 277/336 (82%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 1048 TTGCCTTC-TGTTGATGATCAAACTT-CGTTCGTGGATGTTCAGGTCTTAAGTTGTCTTG 1105
||| |||| ||| ||||| || | || | || || |||||||||||||| |||| |||||
Sbjct 1273 TTG-CTTCATGTGGATGAGCAGA-TTCCATTGGTTGATGTTCAGGTCTTGAGTTATCTTG 1330
Query 1106 AGCCACCAAAGCAAGAACATTCATGTGCCCACAATGGTGATGATCTTCCAGAAGTTCGGG 1165
|| | || ||||||||||||||||||||||||| |||||||| ||||||| || ||| |
Sbjct 1331 AGACGCCGAAGCAAGAACATTCATGTGCCCACATTGGTGATGGTCTTCCAAAAATTCAAG 1390
Query 1166 AAAAGATAGGACGAA-ACTCGAATT-TGGAGATGCTACCAGATAGCGACTTGCTTCCTGT 1223
|| |||||||| || || ||| || | |||| ||||| |||| ||||| ||||| |
Sbjct 1391 AATGGATAGGAC-AAGACCCGACTTCT-GAGACAAAACCAGTTAGCTACTTGATTCCTAT 1448
Query 1224 --A-GATGATCAGACTCCATTTGTTAATGTTCAGGTCTTGAGTTATCTTGAGACGCCAAA 1280
| |||||||| ||| |||| || ||| |||||| | | ||||||||||| |||||
Sbjct 1449 AGATGATGATCAAACTTCATTGGTGGATGCGCAGGTCAT--G-TATCTTGAGACACCAAA 1505
Query 1281 GCAGGATAAACAAGAACATTCATGTGCCCACAGT-GGTGATGATCTTCCAAAAATTCAAA 1339
||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1506 GCAAGATAAACAAGAACATTCATGTGCCCACA-TCGGTGATGATCTTCCAGAAATTCAAC 1564
Query 1340 AATGGACAGGACAAGACCCGAATTTGGAGACAAGAC 1375
|| |||||||||||||| ||||||||||||||||||
Sbjct 1565 AAGGGACAGGACAAGACTCGAATTTGGAGACAAGAC 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5