BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320180
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566... 2560 0.0
AT4G37160.1 | Symbols: sks15 | SKU5 similar 15 | chr4:17494705... 1243 0.0
AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823... 217 3e-55
> AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566-10055317
REVERSE LENGTH=1647
Length=1647
Score = 2560 bits (1386), Expect = 0.0
Identities = 1547/1627 (95%), Gaps = 2/1627 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCAGAAAAATCTCCTGCTTCTAGGGTTCTTATTGGCTTATTGCTTCAGCTCTGTT 60
|||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 7 ATGAAGCAGAAACATCTACTGCTTCTAGGATTCTTATTAGCTTATTGCTTCAGCTCTGTT 66
Query 61 TTTGTGATAAACGCAGAGGACCCGTATCTTTTCTTCACTTGGACTGTTACTTATGGAACC 120
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 67 TTTGTGATAAACGCAGAGGACCCCTACCTTTTCTTCACTTGGACTGTTACTTATGGAACC 126
Query 121 AGATCTCCTTTAGGTGTTCCTCAACAGGTTATACTTATTAATGGCCAGTTTCCTGGTCCT 180
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 127 AGATCGCCTTTAGGTGTTCCTCAACAGGTTATTCTTATTAATGGCCAGTTCCCTGGTCCT 186
Query 181 CCAATTGAAGGTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAGCTTGACGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CCAATTGAAGGTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAGCTTGACGAA 246
Query 241 CCTTTCCTCATCACCTGGAATGGAATTAAACAGAGGAGGATGTCGTGGCAAGACGGTGTT 300
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 247 CCTTTCCTCATCACCTGGAACGGAATTAAACAGAGGAAGATGTCGTGGCAAGACGGTGTT 306
Query 301 TTGGGAACAAACTGTCCGATCCAACCAAAATCGAATTGGACTTACCATTTTCAACTTAAA 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 TTGGGAACAAACTGTCCGATCCAACCAAAATCGAGTTGGACTTACCATTTTCAACTTAAG 366
Query 361 GACCAAATCGGTACTTATACATACTTTGCTTCCACGTCGATGCACAGAGCAAGTGGTGCT 420
|||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 367 GACCAAATCGGTACTTATGCATACTTTGCTTCAACGTCGATGCATAGAGCAAGTGGTGCT 426
Query 421 TTTGGTGGACTTAATGTTAACCAGAGGTCAGTCATCTTCGTTCCTTACCCTAAACCAGAC 480
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTTGGTGCACTTAACGTTAACCAGAGGTCAGTCATCTTCGTTCCTTACCCTAAACCAGAC 486
Query 481 GCTGATTTCACTCTCCTCGTCGGTGATTGGTACAAGATGGGACACAAGGAACTGCGTAGG 540
||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 487 GCTGACTTCACTCTCCTCGTCAGTGATTGGTACAAGATGGGACATAAGGAACTGCAAAGG 546
Query 541 AGGCTCGACTCAGGTCGTGATCTTCCTCCTCCGGATGGTCTTCTCATCAACGGTGCTTCT 600
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGGCTCGACTCAAGTCGTGCTCTTCCTCCTCCGGATGGTCTTCTCATCAACGGTGCTTCT 606
Query 601 AAAGGTTTAGTCTTCACCGGGCAACATGGCAAGATATATAGGTTTCGGATATCGAATGTT 660
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAAGGTTTAGTCTTTACCGGTCAACATGGCAAGATATATAGGTTTCGGATATCGAATGTT 666
Query 661 GGGATATCGACATCAATTAACTTTAGGATACAAGGACACATGATGACTCTCGTTGAAGTA 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 GGGATATCGACATCGATTAACTTTAGGATACAAGGACACATGATGACTCTCGTCGAAGTA 726
Query 721 GAAGGCTCTCACACTCTACAAGAGGTCTATGAGTCACTTGACATACACGTTGGCCAGTCT 780
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 727 GAAGGTTCTCACACTCTGCAAGAGGTCTATGAATCGCTTGACATACACGTTGGCCAGTCT 786
Query 781 GTGACCGTGCTGGTCACATTGAAGGCTCCAGTGAAGGACTACTTTATTGTAGCTTCAACC 840
||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 787 GTGACCGTGTTGGTCACATTGAAGGCTCCAGTGAAGGACTACTTCATCGTGGCTTCAACT 846
Query 841 CGATTTACCAAACCGGTGCTGACTACTACAGGAATCCTCAGTTACCAAGGCTCCAAAATC 900
|| ||||||||||| | || || || |||||||||||||| |||||||| |||||||||
Sbjct 847 CGGTTTACCAAACCTATACTAACCACCACAGGAATCCTCAGCTACCAAGGTTCCAAAATC 906
Query 901 AGACCATCTCATCCCCTTCCCATTGGTCCTACTTACCATATTCACTGGTCCATGAAACAA 960
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 907 AGACCATCACATCCCCTTCCCATTGGTCCTACTTACCATATCCATTGGTCCATGAAACAA 966
Query 961 GCAAGAACCATCAGGTTAAATTTGACGGCGAATGCAGCAAGACCAAATCCACAAGGATCC 1020
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 967 GCAAGAACCATCAGGCTAAATTTGACGGCGAATGCAGCAAGGCCAAATCCACAAGGATCC 1026
Query 1021 TTTCACTACGGTACCATACCGATAAATCGAACTTTTGTTTTAGCCAACGGAAGAGCGA-G 1079
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1027 TTTCACTACGGTACTATACCGATAAATCGAACTTTTGTTTTAGCCAACGGAAGAGCCATG 1086
Query 1080 CATCAATGGGAAGCTTCGGTACACAGTAAACCGTGTGTCCTACGTTAACCCAACAACTCC 1139
||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1087 -ATCAATGGGAAACTTCGGTACACAGTGAACCGTGTGTCCTACGTTAACCCAGCAACTCC 1145
Query 1140 ATTGAAATTAGCCGACTGGTTCAACATTCCCGGGGTGTTCAATTTCAAGACGATTTTGAA 1199
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 1146 ATTGAAATTAGCCGACTGGTTCAACATTCCCGGGGTGTTCAATTTCAAAACCATTATGAA 1205
Query 1200 CATTCCTACACCAGGACCCTCCATTCTCGGAACTTCGGTCTTTGACGTGGCTCTTCATGA 1259
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1206 CATTCCCACACCAGGACCCTCCATTCTCGGAACTTCGGTCTTTGATGTGGCTCTCCATGA 1265
Query 1260 GTACGTCGAGTTCGTGTTCCAGAACAACGAGACATCTATACAATCTTGGCACCTTGACGG 1319
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1266 GTACGTCGAATTCGTGTTCCAGAACAACGAGGGATCTATACAATCTTGGCACCTTGACGG 1325
Query 1320 CACTAGTGCATATGTTGTTGGATACGGGTCGGGCACATGGAACATGGCCAACAGGAGGGG 1379
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1326 CACTAGTGCATATGTTGTTGGATACGGGTCGGGCACATGGAACATGGCTAAGAGGAGAGG 1385
Query 1380 TTACAATTTGGTTGATGCTGTTTCAAGGCACACTTTTCAGGTGTATCCAATGTCGTGGAC 1439
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1386 TTATAATTTGGTTGATGCTGTTTCAAGGCACACTTTTCAGGTTTATCCAATGTCGTGGAC 1445
Query 1440 GAGCATATTGGTATCACTAGACAATAAGGGAATGTGGAATTTGAGGTCACAAATATGGTC 1499
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GAGCATATTGGTATCATTAGACAATAAGGGAATGTGGAATTTGAGGTCACAAATATGGTC 1505
Query 1500 AAGGAGATACTTAGGACAAGAACTCTATGTTCGTGTATGGAACGACGAGAGGTCTCTTTA 1559
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1506 AAGGAGATACTTAGGACAAGAACTCTATGTTCGTGTATGGAACAACGAGAAGTCTCTTTA 1565
Query 1560 CACTGAAGCCGAGCCTCCTGTTAATGCTCTCTTTTGCGGCAAAGCCAAACGTCCCCGCTT 1619
||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 1566 CACTGAATCCGAGCCTCCTGTTAATGTTCTCTTTTGCGGCAAGGCCAAACATCCCCGCTT 1625
Query 1620 GATTTAG 1626
|||||||
Sbjct 1626 GATTTAG 1632
> AT4G37160.1 | Symbols: sks15 | SKU5 similar 15 | chr4:17494705-17497124
REVERSE LENGTH=1741
Length=1741
Score = 1243 bits (673), Expect = 0.0
Identities = 1306/1606 (81%), Gaps = 66/1606 (4%)
Strand=Plus/Plus
Query 53 GCTCTGTTTTTGTGATAAACGCAGAGGACCCGTATCTTTTCTTCACTTGGACTGTTACTT 112
|||||| ||||| | | || ||||| ||||| ||| | |||| |||||||||||||||||
Sbjct 59 GCTCTG-TTTTG-G-TTAATGCAGAAGACCCATATATGTTCTACACTTGGACTGTTACTT 115
Query 113 ATGGAACCAGATCTCCTTTAGGTGTTCCTCAACAGGTTATACTTATTAATGGCCAGTTTC 172
|||| || ||||||||||||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct 116 ATGGTACAAGATCTCCTTTAGGTGTTCCTCAACAGGTCATTCTTATCAATGGACAGTTCC 175
Query 173 CTGGTCCTCCAATTGAAG-GTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAG 231
||||||| | ||||||| | || |||||||| || || ||||||||| |||||||||||
Sbjct 176 CTGGTCCAGCGATTGAAGCG-GTCACAAACAACAACATTGTTGTTAATCTCATTAACAAG 234
Query 232 CTTGACGAACCTTTCCTCATCACCTGGAATGGAATTAAACAGAGGAGGATGTCGTGGCAA 291
|| ||||| || ||||||||||||||||||||| | || |||||||||| |||||||||
Sbjct 235 CTGGACGAGCCATTCCTCATCACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAA 294
Query 292 GACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCGAATTGGACTTACCATTTT 351
|| || || ||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 295 GATGGAGTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTT 354
Query 352 CAACTTAAAGACCAAATCGGTACTTATACATACTTTGCTTCCACGTCGA-TGCACAGAGC 410
||||||||||| |||||||||||||| || ||||| ||||||||||| | ||||| ||||
Sbjct 355 CAACTTAAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTC-ACTGCACCGAGC 413
Query 411 AAGTGGTGCTTTTGGTGGACTTAATGTTAACCAGAGGTCAGTCATCTTCGT-TCCTTACC 469
|||||||||||||||| || || |||||||||| || || || | || |||||| |
Sbjct 414 CAGTGGTGCTTTTGGTGCTCTCAACATTAACCAGAGATCTGTTAT-TACGACTCCTTATC 472
Query 470 CTAA-ACCAGACGCTGATTTCACTCTCCTCGTCGGTGATTGGTAC--AAGATGGGAC--A 524
| || ||| || | |||||||| ||||||||| ||| |||| | || || ||| |
Sbjct 473 C-AACACCCGATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAA-ATATGACCCA 530
Query 525 CAAGGAACT-GCGTAGGAG-GCTCGACTCAGG-TCGTGATCTTCCTCCTCCGGATGGTCT 581
|||||| || ||| | | ||||||| |||| || || |||||||| ||| |||| |||
Sbjct 531 CAAGGA-CTTGCGAAA-ATCGCTCGACGCAGGCTC-TGCTCTTCCTCTTCCTGATGCTCT 587
Query 582 TCTCATCAACGGTG-CTTCTAAAGGTTTAGTCTTCACCGGGCAACATGGCAAGATATATA 640
||||||||| || | || ||||||||||| |||| ||||| ||||| || || | ||| |
Sbjct 588 TCTCATCAATGGAGTCT-CTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATACA 646
Query 641 GGTTTCGGATATCGAATGTTGGGATATCGACATCAATTAACTTTAGGATACAAGGA-CAC 699
||| ||| |||| ||||| || ||| | ||||| || || |||||||| ||| | |||
Sbjct 647 AGTTCCGGGTATCCAATGTCGGTATAGCTACATCGATAAATTTTAGGATTCAAA-ATCAC 705
Query 700 ATGATGA-CTCTCGTTGAAGTAGAAGGCTCTCACACTCTACAAGAG-GTCTATGAGTCAC 757
| |||| | ||| |||||||||||||| |||||||||| || ||| || |||||||| |
Sbjct 706 ACAATGAGC-CTCATTGAAGTAGAAGGCGCTCACACTCTTCAGGAGAGT-TATGAGTCGC 763
Query 758 TTGACATACACGTTGGCCAGTCTGTGACCGTGCTGGTCACATTGAAGGCTCCAGTGAAGG 817
||||| | |||||||| ||||| ||||||| |||||||| || || ||| | |||| ||
Sbjct 764 TTGACGTCCACGTTGGTCAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGG 823
Query 818 ACTACTTT-ATTGTAGCTTCAACCCGATTTACCAAACCGGTGCTGACTACTACAG-GAAT 875
|||| ||| || || || |||||||| ||||| |||||||| || || || || | || |
Sbjct 824 ACTA-TTTCATCGTGGCCTCAACCCGGTTTACAAAACCGGTACTAACCACAACCGCGAGT 882
Query 876 CCTCAGTTACCAAGGCTCCAAAATCAGAC--CATCTCATCCCCTTCCCATTGGTCCTACT 933
| || |||||||||||||||||| | | | ||| | || || |||||||||||||||
Sbjct 883 C-TCCGTTACCAAGGCTCCAAAAAC-G-CTGCATATGGGCCTCTCCCCATTGGTCCTACT 939
Query 934 TACCATATTCACTGGTCCATGAAACAAGCAAGAACCATCAGGTTAAATTTGACGGCGAAT 993
|||||||| || |||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 940 TACCATATCCATTGGTCCATGAAACAAGCAAGAACCATTAGGATGAATTTGACGGCAAAT 999
Query 994 GCAGCAAGACCAAATCCACAAGGATCCTTTCACTACGGTACCATACCGATAAATCGAACT 1053
|| ||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 1000 GCTGCAAGGCCAAACCCACAAGGATCATTTCATTACGGGACCATACCAATAAACCGAACT 1059
Query 1054 TTTGTTTTAGCCAACGGAAG--AGCGA--GCATCAATGGGAAGCTTCGGTACACAGTAAA 1109
| || ||||||| | | | | | | | ||| | |||||||||||||||||||||||
Sbjct 1060 CTAGTCCTAGCCAATGCA-GCCA-C-ATTG-ATCTACGGGAAGCTTCGGTACACAGTAAA 1115
Query 1110 CCGTGTGTCCTACGTTAACCCAACAACTCCATTGAAATTAGCCGACTGGTTCAACATTCC 1169
||| | || ||| | ||||||||||| ||||||||| | || || |||| |||||| |
Sbjct 1116 CCGAATATCATACATCAACCCAACAACACCATTGAAACTCGCTGATTGGTACAACAT-CT 1174
Query 1170 CGGG-GTGTTCAATTTCAAGACGATT-TTGAACATTCCTACA-CCAGGACC--CTCCAT- 1223
|||| |||||| |||||||||| || || | || ||| ||| || ||||| ||| ||
Sbjct 1175 CGGGCGTGTTCGATTTCAAGACAATCATT-AGCACTCCAACAACC-GGACCGGCTC-ATA 1231
Query 1224 TCTCGGAACTTCGGTCTTT-GACGTGGCTCTTCATGAGTACGTCGAGTTCGTGTTCCAGA 1282
| | || || ||||| | | ||||| | |||||||||| |||||| |||| ||||| |
Sbjct 1232 T-T-GGTACATCGGT-TATCGACGTTGAACTTCATGAGTTCGTCGAAATCGTTTTCCAAA 1288
Query 1283 ACAACGAGACATCTATACAATCTTGGCACCTTGACGGCACTAGTGCATATGTTGTTGGAT 1342
|| |||| | ||| || |||||||||||| | ||||| ||||| || |||| ||| ||||
Sbjct 1289 ACGACGAAAGATCAATTCAATCTTGGCACATGGACGGTACTAGCGCCTATGCTGTCGGAT 1348
Query 1343 ACGGGTC-GGGCACATGGAACATGGCCAACAGGAGGGGTTACAATTTGGTTGATGCTGTT 1401
||||||| ||| ||||||||| || ||| |||| ||||||| |||||||||||||||
Sbjct 1349 ACGGGTCAGGG-ACATGGAACGTGACCATGAGGAAACGTTACAACTTGGTTGATGCTGTT 1407
Query 1402 TCAAGGCACACTTTTCAGGTGTATCCAATGTCGTGGACGAGCATATTGGTATCACTAGAC 1461
|||| |||||||||||||||||||| | |||||||| | ||||||||| || | ||
Sbjct 1408 CCAAGACACACTTTTCAGGTGTATCCGTTATCGTGGACAACCATATTGGTGTCGTTGGAT 1467
Query 1462 AATAAGGGAATGTGGAATTTGAGGTCACAAATATGGTCAAGGAGATACTTAGGACAAGAA 1521
|| || |||||||||||| | ||||||||||||||||| ||||| || |||||||||||
Sbjct 1468 AACAAAGGAATGTGGAATCTAAGGTCACAAATATGGTCGAGGAGGTATTTAGGACAAGAG 1527
Query 1522 CTCTATGTTCGTGTATGGAACGACGAGAGGTCTCTTTACACTGAAGCCGAGCCTCCTGTT 1581
|||||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||| ||
Sbjct 1528 CTCTATGTTCGTGTTTGGAACGATGAGAAGTCTCTCTACACTGAAGCTGAGCCTCCTCTT 1587
Query 1582 AATGCTCTCTT-TTGCGGCAAAGCCAAACGTCCCCGCTT-GATTTA 1625
|| | ||| || ||||||||||||||||||||||| || ||||||
Sbjct 1588 AACGTTCT-TTATTGCGGCAAAGCCAAACGTCCCCT-TTAGATTTA 1631
> AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823-26725626
FORWARD LENGTH=2037
Length=2037
Score = 217 bits (117), Expect = 3e-55
Identities = 245/306 (80%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 96 CACTTGGACTGTTACTTATGGAACCAGATCTCCT-TTAGGTGTTCCTCAACAGGTTATAC 154
|||||||||||| |||||||| | | |||||| || |||||||||||||||||||| |
Sbjct 257 CACTTGGACTGTGACTTATGGCATTATCTCTCCTCTT-GGTGTTCCTCAACAGGTTATTC 315
Query 155 TTATTAATGGCCAGTTTCCTGGTCCTCCAA-TTGAAGGTGTAACAAACAATAATATCGTT 213
| || ||||| |||||||||||||| || |||||| ||| || ||| | || ||| |
Sbjct 316 TCATCAATGGTCAGTTTCCTGGTCC-AAAACTTGAAGTTGTGACCAACGACAACATCATC 374
Query 214 GTTAATGTCATTAACAAGCTTGACGAACCTTTCCTCATCACCTGGAATGGAATTAAACAG 273
| || |||| ||||| |||||| | ||||||||| | ||||||||||| ||||| |||
Sbjct 375 CTCAACCTCATCAACAAACTTGACCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAG 434
Query 274 AGGAGGATGTCGTGGCAAGACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCG 333
|||| || || |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 435 AGGAAGAACTCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAACTCA 494
Query 334 AA-TTGGACTTACCATTTTCAA-CTTAAAGACCAAATCGGTACTTAT-A-CATACTTTGC 389
|| || |||||| | || ||| | ||||| || ||||| |||| | | | ||||| |
Sbjct 495 AACTTC-ACTTACAAATTCCAAACC-AAAGATCAGATCGGAACTT-TCAAC-TACTTCCC 550
Query 390 TTCCAC 395
||||||
Sbjct 551 TTCCAC 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5