BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg320214 Length=1818 Score E Sequences producing significant alignments: (Bits) Value AT2G24070.1 | Symbols: QWRF4 | Family of unknown function (DUF5... 2433 0.0 > AT2G24070.1 | Symbols: QWRF4 | Family of unknown function (DUF566) | chr2:10231822-10234296 REVERSE LENGTH=2140 Length=2140 Score = 2433 bits (1317), Expect = 0.0 Identities = 1648/1800 (92%), Gaps = 53/1800 (3%) Strand=Plus/Plus Query 35 CAAGACCGCCTCTTGTTCCAACTGAGAAGAACAATG-CGGTTGTTGTGACGCGCCGTGCT 93 ||||||||||||||| |||| ||||||||||||||| |||| ||| |||||||||||| Sbjct 378 CAAGACCGCCTCTTGCTCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCT 436 Query 94 AGAACAATGGAGGTTAGTTTAAGATACAGATCACCTACTCCTACTAAAACTCGGAGATGT 153 ||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||| Sbjct 437 AGAACAATGGAGGTTAGTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGT 496 Query 154 CCTTCACCTAATGTCACCAGGACTGTGTCTCCTTCAGC-CTCTCAATC--TCTGTCGAAA 210 |||||||||| |||||||||||||| | || ||||| | | || |||| ||| | |||| Sbjct 497 CCTTCACCTATTGTCACCAGGACTGCGCCTTCTTCATCAC-CTGAATCGTTCT-T-GAAA 553 Query 211 AGAGCTGTTTCAGCGGAAAGGAAACGTGGTCCTTCGACACCAACTACTCCGTCTACACCG 270 ||||| ||||||||||| ||||| |||||||||||||||||||||| || ||| Sbjct 554 AGAGCGGTTTCAGCGGAGAGGAACCGTGGTCCTTCGACACCAACTA---CG------CCG 604 Query 271 GTTAGTGATGTATTGATAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 330 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 GTTAGTGATGTATTGGTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 664 Query 331 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCGGATTCA 390 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 665 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCA 724 Query 391 GTCTCAGTGCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGATTGATCGGACA 450 || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 725 GTGTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGACTGATCGGACA 784 Query 451 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAATGAGACAACCTCTGTGTCG 510 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAGTGAGACAACCTCTGTAACA 844 Query 511 CCTAAACATATGCCCGAGAGGAAAAGAAGTCCACTGAAGGGAAAGAATGTGTCTTCTGGT 570 ||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 845 AGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAAGGGAAAGAATGTGTCTCCTGGT 904 Query 571 CAATCAGAGAATTCAAAACCTGTGGATGGTTCTTCTCATAGTAGGTTAATACCACCACAG 630 ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| Sbjct 905 CAATCAGAGAATTCAAAACCTATGGATGG---TTCTCATAGTATGTTAATACCACCACAG 961 Query 631 CATCGATGGCCTAGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGCGATAAAGCGGTC 690 ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGGGATAAAGCGGTC 1021 Query 691 AGGAGAGTGTCATTGCCTTTGTCCAAGAAAAGCTCTAAACCTTTGCATTATAAGTCTTCT 750 |||||||||||||||||||||||||| |||||||||| | ||| | ||||||||| Sbjct 1022 AGGAGAGTGTCATTGCCTTTGTCCAATAAAAGCTCTAGA------CATAAGAAGTCTTCT 1075 Query 751 AGTGACATAGA-AAGGTTGTTGTCTTGTTATGAAAATGGTGGACTAGAAGTTTTGTCTTC 809 ||||||||| | ||||||||| || |||||||| |||||| |||||||||||| ||| || Sbjct 1076 AGTGACATA-ACAAGGTTGTTTTCATGTTATGATAATGGTAGACTAGAAGTTTCGTCATC 1134 Query 810 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCTTTTTTCTGCAAGTTCGTT 869 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || Sbjct 1135 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCATTTTTCTACAAGTTCATT 1194 Query 870 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGCGCTGCTTCACCAAGCAGATCCTC 929 |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct 1195 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGTACTGCTTCTCCTAGCAGATCCTC 1254 Query 930 ATTTTCATCATCATC--C-TCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 986 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 ATTTTCATCATCATCATCTTCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 1314 Query 987 TATGAGAGGATTGAGTCCTTCAAGAGTGGGAAACCGCTCTTTTGTGAGATCGTCTACACC 1046 |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 1315 TATGAGAGGATTGAGTCC-T-----GTGGGAAACCGCTCTTTGGTGAGATCGTCTACACC 1368 Query 1047 GCCATCAAGAGGTGTAAGTCCTTCCCCGATAAGACAAATCGCGCAATCCAGTAGTAAC-A 1105 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | Sbjct 1369 GCCATCAAGAGGTGTAAGTCCTTCCCGGATAAGACAAACCGCGCAATCCAGTAGTACCAA 1428 Query 1106 CAACCTCGGTTCTTAGCTTCATTGCGGATGTCAAGAAAGGaaaaaaaGCGACTTACATTG 1165 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1429 C-ACCTCGGTTCTCAGCTTCATTGCGGATGTCAAGAAAGGAAAAAAAGCGACTTACATAG 1487 Query 1166 AAGATGTTCATCAACTACGCTTGCTCTATAA-CAGATATTCGCAATGGCGGTTTGCAAAT 1224 ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 1488 AAGATGTTCATCAACTACGCTTGCTCTATAATC-GATATTCGCAGTGGCGGTTTGCAAAT 1546 Query 1225 GCTCGAGCTGAGGGAGTTAGCTATATTCAAAGCTTAATAGCTGAGGAAACACTATACAAT 1284 ||||||||||||||||| |||||| |||||||||| || ||| ||||||| ||||||||| Sbjct 1547 GCTCGAGCTGAGGGAGTGAGCTATGTTCAAAGCTTGATTGCTAAGGAAACTCTATACAAT 1606 Query 1285 GTTTGGCATGCAATATCAGACTTAAGGGATCTCGTGACAACACAAAGAATTTGTCTCCAA 1344 ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct 1607 GTTTGGCATGCAATATCAGACCTAAGGGATCTAGTGACAACTCAAAGAATTTGTCTCCAA 1666 Query 1345 CAGTTGAAGCTAGAAATCAAGCT-AGAATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1403 ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct 1667 CAGTTGAAGCTAGAAATCAAGTTAAG-ATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1725 Query 1404 GGATTGGGCCATGCTTGAGAGAGAACACATTAGTTCTTTAGCTGGAACAATTGGGGACTT 1463 ||||||||| ||| |||||||||||||||||||||||||||||||| | ||||| ||||| Sbjct 1726 GGATTGGGCAATGGTTGAGAGAGAACACATTAGTTCTTTAGCTGGAGCCATTGGAGACTT 1785 Query 1464 GGAAGCAAATACACTTCGGCTTCCACTAGCCGGAGGAACAAAGGCGGACCTCGGATCTCT 1523 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1786 AGAAGCAAATACACTCCGGCTTCCACTAGCCGGAGGAACAAAGGCAGACCTAGGATCTCT 1845 Query 1524 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1846 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1905 Query 1584 TCTACACTCGCAAATGGAGGAAATGAATAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1643 | |||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1906 TTTACATTCGCAGATGGAGGAGATGAACAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1965 Query 1644 AA-AGGAGAACTTTTTGCTTGACAAATGCGAAAATCTTCT-GACATCAACTGCAGTCATG 1701 || || |||| ||||||||||||||||| |||||||| || | ||||||||||||||||| Sbjct 1966 AACAG-AGAATTTTTTGCTTGACAAATGTGAAAATCT-CTTGGCATCAACTGCAGTCATG 2023 Query 1702 Gagatagaagagagaagcctcaagactcatatgatacaaaagaagaaagaagcagaagaa 1761 |||||||||||| | ||||||||||||||| |||||||||||||| |||||| | | ||| Sbjct 2024 GAGATAGAAGAGCGTAGCCTCAAGACTCATCTGATACAAAAGAAGCAAGAAG-A-A-GAA 2080 Query 1762 gtaagaaaTGATGCAGAGTCT-C-C-ATTATTGACATTAAGCAAGATTCCATGGCCTTAA 1818 |||||| |||||||||||||| | | ||| ||| ||||||||||| ||| |||||||||| Sbjct 2081 GTAAGAGATGATGCAGAGTCTTCTCCATTGTTGCCATTAAGCAAGTTTCAATGGCCTTAA 2140 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89959376640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5