BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320214
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24070.1 | Symbols: QWRF4 | Family of unknown function (DUF5... 2433 0.0
> AT2G24070.1 | Symbols: QWRF4 | Family of unknown function (DUF566)
| chr2:10231822-10234296 REVERSE LENGTH=2140
Length=2140
Score = 2433 bits (1317), Expect = 0.0
Identities = 1648/1800 (92%), Gaps = 53/1800 (3%)
Strand=Plus/Plus
Query 35 CAAGACCGCCTCTTGTTCCAACTGAGAAGAACAATG-CGGTTGTTGTGACGCGCCGTGCT 93
||||||||||||||| |||| ||||||||||||||| |||| ||| ||||||||||||
Sbjct 378 CAAGACCGCCTCTTGCTCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCT 436
Query 94 AGAACAATGGAGGTTAGTTTAAGATACAGATCACCTACTCCTACTAAAACTCGGAGATGT 153
||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||
Sbjct 437 AGAACAATGGAGGTTAGTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGT 496
Query 154 CCTTCACCTAATGTCACCAGGACTGTGTCTCCTTCAGC-CTCTCAATC--TCTGTCGAAA 210
|||||||||| |||||||||||||| | || ||||| | | || |||| ||| | ||||
Sbjct 497 CCTTCACCTATTGTCACCAGGACTGCGCCTTCTTCATCAC-CTGAATCGTTCT-T-GAAA 553
Query 211 AGAGCTGTTTCAGCGGAAAGGAAACGTGGTCCTTCGACACCAACTACTCCGTCTACACCG 270
||||| ||||||||||| ||||| |||||||||||||||||||||| || |||
Sbjct 554 AGAGCGGTTTCAGCGGAGAGGAACCGTGGTCCTTCGACACCAACTA---CG------CCG 604
Query 271 GTTAGTGATGTATTGATAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 330
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTTAGTGATGTATTGGTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 664
Query 331 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCGGATTCA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 665 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCA 724
Query 391 GTCTCAGTGCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGATTGATCGGACA 450
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 725 GTGTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGACTGATCGGACA 784
Query 451 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAATGAGACAACCTCTGTGTCG 510
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAGTGAGACAACCTCTGTAACA 844
Query 511 CCTAAACATATGCCCGAGAGGAAAAGAAGTCCACTGAAGGGAAAGAATGTGTCTTCTGGT 570
||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 845 AGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAAGGGAAAGAATGTGTCTCCTGGT 904
Query 571 CAATCAGAGAATTCAAAACCTGTGGATGGTTCTTCTCATAGTAGGTTAATACCACCACAG 630
||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 905 CAATCAGAGAATTCAAAACCTATGGATGG---TTCTCATAGTATGTTAATACCACCACAG 961
Query 631 CATCGATGGCCTAGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGCGATAAAGCGGTC 690
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGGGATAAAGCGGTC 1021
Query 691 AGGAGAGTGTCATTGCCTTTGTCCAAGAAAAGCTCTAAACCTTTGCATTATAAGTCTTCT 750
|||||||||||||||||||||||||| |||||||||| | ||| | |||||||||
Sbjct 1022 AGGAGAGTGTCATTGCCTTTGTCCAATAAAAGCTCTAGA------CATAAGAAGTCTTCT 1075
Query 751 AGTGACATAGA-AAGGTTGTTGTCTTGTTATGAAAATGGTGGACTAGAAGTTTTGTCTTC 809
||||||||| | ||||||||| || |||||||| |||||| |||||||||||| ||| ||
Sbjct 1076 AGTGACATA-ACAAGGTTGTTTTCATGTTATGATAATGGTAGACTAGAAGTTTCGTCATC 1134
Query 810 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCTTTTTTCTGCAAGTTCGTT 869
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 1135 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCATTTTTCTACAAGTTCATT 1194
Query 870 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGCGCTGCTTCACCAAGCAGATCCTC 929
|||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 1195 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGTACTGCTTCTCCTAGCAGATCCTC 1254
Query 930 ATTTTCATCATCATC--C-TCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 986
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATTTTCATCATCATCATCTTCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 1314
Query 987 TATGAGAGGATTGAGTCCTTCAAGAGTGGGAAACCGCTCTTTTGTGAGATCGTCTACACC 1046
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 1315 TATGAGAGGATTGAGTCC-T-----GTGGGAAACCGCTCTTTGGTGAGATCGTCTACACC 1368
Query 1047 GCCATCAAGAGGTGTAAGTCCTTCCCCGATAAGACAAATCGCGCAATCCAGTAGTAAC-A 1105
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 1369 GCCATCAAGAGGTGTAAGTCCTTCCCGGATAAGACAAACCGCGCAATCCAGTAGTACCAA 1428
Query 1106 CAACCTCGGTTCTTAGCTTCATTGCGGATGTCAAGAAAGGaaaaaaaGCGACTTACATTG 1165
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1429 C-ACCTCGGTTCTCAGCTTCATTGCGGATGTCAAGAAAGGAAAAAAAGCGACTTACATAG 1487
Query 1166 AAGATGTTCATCAACTACGCTTGCTCTATAA-CAGATATTCGCAATGGCGGTTTGCAAAT 1224
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1488 AAGATGTTCATCAACTACGCTTGCTCTATAATC-GATATTCGCAGTGGCGGTTTGCAAAT 1546
Query 1225 GCTCGAGCTGAGGGAGTTAGCTATATTCAAAGCTTAATAGCTGAGGAAACACTATACAAT 1284
||||||||||||||||| |||||| |||||||||| || ||| ||||||| |||||||||
Sbjct 1547 GCTCGAGCTGAGGGAGTGAGCTATGTTCAAAGCTTGATTGCTAAGGAAACTCTATACAAT 1606
Query 1285 GTTTGGCATGCAATATCAGACTTAAGGGATCTCGTGACAACACAAAGAATTTGTCTCCAA 1344
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1607 GTTTGGCATGCAATATCAGACCTAAGGGATCTAGTGACAACTCAAAGAATTTGTCTCCAA 1666
Query 1345 CAGTTGAAGCTAGAAATCAAGCT-AGAATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1403
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1667 CAGTTGAAGCTAGAAATCAAGTTAAG-ATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1725
Query 1404 GGATTGGGCCATGCTTGAGAGAGAACACATTAGTTCTTTAGCTGGAACAATTGGGGACTT 1463
||||||||| ||| |||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 1726 GGATTGGGCAATGGTTGAGAGAGAACACATTAGTTCTTTAGCTGGAGCCATTGGAGACTT 1785
Query 1464 GGAAGCAAATACACTTCGGCTTCCACTAGCCGGAGGAACAAAGGCGGACCTCGGATCTCT 1523
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1786 AGAAGCAAATACACTCCGGCTTCCACTAGCCGGAGGAACAAAGGCAGACCTAGGATCTCT 1845
Query 1524 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1905
Query 1584 TCTACACTCGCAAATGGAGGAAATGAATAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1643
| |||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1906 TTTACATTCGCAGATGGAGGAGATGAACAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1965
Query 1644 AA-AGGAGAACTTTTTGCTTGACAAATGCGAAAATCTTCT-GACATCAACTGCAGTCATG 1701
|| || |||| ||||||||||||||||| |||||||| || | |||||||||||||||||
Sbjct 1966 AACAG-AGAATTTTTTGCTTGACAAATGTGAAAATCT-CTTGGCATCAACTGCAGTCATG 2023
Query 1702 Gagatagaagagagaagcctcaagactcatatgatacaaaagaagaaagaagcagaagaa 1761
|||||||||||| | ||||||||||||||| |||||||||||||| |||||| | | |||
Sbjct 2024 GAGATAGAAGAGCGTAGCCTCAAGACTCATCTGATACAAAAGAAGCAAGAAG-A-A-GAA 2080
Query 1762 gtaagaaaTGATGCAGAGTCT-C-C-ATTATTGACATTAAGCAAGATTCCATGGCCTTAA 1818
|||||| |||||||||||||| | | ||| ||| ||||||||||| ||| ||||||||||
Sbjct 2081 GTAAGAGATGATGCAGAGTCTTCTCCATTGTTGCCATTAAGCAAGTTTCAATGGCCTTAA 2140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5