BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320235
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24250.1 | Symbols: | Protein of unknown function (DUF295) ... 941 0.0
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 244 1e-63
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 182 9e-45
> AT2G24250.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10313286-10314910 REVERSE LENGTH=1335
Length=1335
Score = 941 bits (509), Expect = 0.0
Identities = 797/929 (86%), Gaps = 48/929 (5%)
Strand=Plus/Plus
Query 251 AAAGCAAAGA-AT-TG-TGCACCCTAGAGAAGGTCCCTTTGTTCCTCTTTAGACTCCGAG 307
|||||||||| | || |||||||| ||||||||||||||||||||||||||| | | |
Sbjct 272 AAAGCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTTCCTCTTTAGAGTTCTAA 331
Query 308 CTCCT-C--ATG--G-TGATGC-TGCT--GAGTATTTTATTGGAGGGA-TAGGCCGAGAT 357
||||| | ||| | |||||| | || || |||||| | ||| ||| |||||| ||||
Sbjct 332 CTCCTCCTGATGCTGCTGATGCTTCCTCCGAATATTTTCTGGGA-GGATTAGGCCAAGAT 390
Query 358 GAGTCAGATGATCATCTCGAGCTTCCATCTCCTCTTCAGTGCTCAGTGAAAGTCAA-GAT 416
||||| |||||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 391 AAGTCAAATGATCATGTGGAGCTTCCATCTCCTCTTCAGTGCTCAGTGAAAGTCAATG-T 449
Query 417 TCCAGGAACTGAGCCAACCTTGATGAACATACTCGACTGTCAGATTC-TCTCTTTAGGCC 475
||||||||||||||||| ||||||||||| || ||||| |||| || || || | ||||
Sbjct 450 TCCAGGAACTGAGCCAATTTTGATGAACATGCTTGACTGCCAGA-TCATCCCTCTGGGCC 508
Query 476 ATCAGTACAGA---ATGATCGGTTGCATTCCTAAAGATTGCGGAGGTG-TGTCTTTTCTT 531
|| |||||||| ||||||||||||| |||| |||| | | | ||| | ||||||||
Sbjct 509 ATAAGTACAGATTGATGATCGGTTGCAATCCTGAAGAATAC--A-GTGCAG-CTTTTCTT 564
Query 532 CCGCT--A--AACAAGGA--AGGAGGAGAATTTGTTGTGCTCATCCTCAACTGCACT-A- 583
||||| | |||||||| |||||| ||||| | | ||| | ||||| |||||||| |
Sbjct 565 CCGCTAAACGAACAAGGAGGAGGAGGCGAATTCG-T-TGCGC-TCCTCGACTGCACTGAT 621
Query 584 ATGTTTGGTTGGTGTTAAGAAGTGCTGAAATGAGATGGA-GGGAGCTTAAGGAACTCTCA 642
||||| ||||||||||||||| ||||||||||||||| | |||| || ||| ||||
Sbjct 622 TTGTTT--TTGGTGTTAAGAAGTACTGAAATGAGATGGATTCG-GCTTGAGAAACCCTCA 678
Query 643 ACTGCTGCATGTAGGGAGTTATTCACTTTTCGAGGCAGATTTTATGCATCTTTCTTTAAT 702
|||||| |||||| |||||||||||||||| |||| || || |||||| |||||||||||
Sbjct 679 ACTGCTTCATGTAAGGAGTTATTCACTTTTAGAGGAAGGTTCTATGCAACTTTCTTTAAT 738
Query 703 GGGGACAAGTTCGTTATCGATCCTTCTTCGCTGGAAGCGACTCCCCTAACACCTCATAAC 762
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 739 GGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCGACTCCCCTAACACCTCATATC 798
Query 763 GAATCCAACTTTTTGGTTCCTTCTGGCAATGATGAGCTTTTCCTGGTTAAAACAGACTTC 822
|| ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 799 GACTCCAACTTTCTGGTTCCATCTGGCAATGAGGAGCTTTTCCTGGTTAAGACAGACTTC 858
Query 823 CCAACATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTAAATGGGTCGAAGTCAGCGAT 882
| || ||||||||| |||||||||||||||||||||| | ||||||| || |||||||||
Sbjct 859 CTAAGATGTAGAGTAAGTAGGCTAGATGAGGAGGCTGCTGAATGGGTTGAGGTCAGCGAT 918
Query 883 TTGGGAGACCGTGTTTTGTTTATTGGTGGACACCAGGGAAATTTCTGCTGCTCCGCTAAG 942
||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||
Sbjct 919 TTGGGAGACCGTGTTTTGTTTCTTGGTGGACACCTGGGGAATTTCTACTGCTCCGCTAAG 978
Query 943 GAGCTTCCTCAGGGTTGTGGTTTAACTGGGAACTCGATTTTGTTCACCCTTGGG-CGACG 1001
||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||| | |||
Sbjct 979 GAGCTTCCTCATGGTTGTGGTTTGACTGGGGACTCGATTTTGTTCACCGTTGGGTC-ACG 1037
Query 1002 CAATGTAACTTTCCCTTATAAATATGGAGTACATA-A--TACAGGAAATGCAGAAGACGA 1058
||||||||||| ||| ||||||||||||||||||| | || | |||| || |||||| |
Sbjct 1038 CAATGTAACTTACCCCTATAAATATGGAGTACATACAAATAAAAGAAAGGCTGAAGACAA 1097
Query 1059 TATCAATTGTTGGAGATCCTCAATGGAGAATCGTGTGATGATCCTCAACAAATATTTTCC 1118
||||||||||||||||||||||| ||||||||||||| || ||| ||||| |||| |||
Sbjct 1098 TATCAATTGTTGGAGATCCTCAAGGGAGAATCGTGTGTTGTTCCGCAACAGATATGATCC 1157
Query 1119 GGTCCT-TGCTTTCCAGGTTGAACGCTAG 1146
|||||| | |||||| |||||||||||||
Sbjct 1158 GGTCCTGT-CTTTCCGGGTTGAACGCTAG 1185
Score = 219 bits (118), Expect = 7e-56
Identities = 164/186 (88%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 22 AAGAAGACATCAACAACATCGATAAAGCCAGACTTGTCTCAGCTCCCGGAAGAGTTACTG 81
||||||| ||||||| ||||||||| |||||||| |||||||||||| |||||| ||||
Sbjct 73 AAGAAGATATCAACATCATCGATAATGCCAGACTGGTCTCAGCTCCCTGAAGAGCTACTT 132
Query 82 CACCTTATCTCGACGCATCTA-AAGA--ACTGTTTCGATGTTGTTCATGCTCGCTCTGTT 138
||| ||||||| ||||||||| | || ||| |||||||| ||||||||| |||||||||
Sbjct 133 CACATTATCTCAACGCATCTAGAGGATCACTATTTCGATGCTGTTCATGCCCGCTCTGTT 192
Query 139 TGCAGCTTGTGGCGATCCACATTTCCATTTCCTTCTTCCCTATTACGCCAAAGCTATTCT 198
||| ||| ||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 193 TGCCGCTCATGGCGATCCACATTTCCATTTCCTTCTTCTCTATTACGCCAAAGTTACTCT 252
Query 199 CTTCCC 204
||||||
Sbjct 253 CTTCCC 258
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 244 bits (132), Expect = 1e-63
Identities = 238/287 (83%), Gaps = 16/287 (6%)
Strand=Plus/Plus
Query 827 CATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTAAATGGGTCGAAGTCAGCGATTTGG 886
||||||||||||||||||||||||||||||||||| ||||||| || || | ||||||||
Sbjct 1065 CATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGATTTGG 1124
Query 887 GAGACCGTGTTTTGTTTATTGGTGGACACCAGGGAAATTTCTGCTGCTCCGCTAAGGAGC 946
|||||||||| ||||||||||| |||| |||||| |||||||||| ||||||||||
Sbjct 1125 GAGACCGTGTGTTGTTTATTGG---ACACTTTGGAAATGTCTGCTGCTCAGCTAAGGAGC 1181
Query 947 TTCCTCAGGGTTGTGGTTTAACTGGGAACTCGATTTTGTTCACCCTTGGGCGACGCAATG 1006
||||| | ||||||||| | | ||||||||| |||||||||||| || || | || |||
Sbjct 1182 TTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCAGGCTATG 1241
Query 1007 TAAC-TTTCCCTTATAAATATGGAGTACATAATACAGGAAATGCAGAAGACGATA-TCAA 1064
|||| ||| ||| ||||||| |||||||||| |||||| || |||||||| | | ||
Sbjct 1242 TAACGTTTGCCT-ATAAATACGGAGTACATA---CAGGAAGGGCGGAAGACGA-ACTTAA 1296
Query 1065 T-TGTTGGAGATCCTCAATGGAGAA-T-CGTGTGATGATCCTCAACA 1108
| | |||||||| ||||| | |||| | || || |||||| ||||||
Sbjct 1297 TAT-TTGGAGATTCTCAA-G-AGAAATACGAGTAATGATCGTCAACA 1340
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 182 bits (98), Expect = 9e-45
Identities = 174/208 (84%), Gaps = 16/208 (8%)
Strand=Plus/Plus
Query 1 ATGGCAGAACCCAAAACGAGGAAGAAGACATCAACAACATCGATAAAGCCAGACTTGTCT 60
||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||
Sbjct 173 ATGGCAGAACCCAAAAC---GAAGAAGACATCAACATCATCGATAACCCCAGACTGGTCT 229
Query 61 CAGCTCCCGGAAGAGTTACTGCACCTTATCTCGACGCATCTA---AAGAACTGTTTCGAT 117
||||||| || ||| ||||| ||||| || | ||||| | ||||||||||||
Sbjct 230 GAGCTCCCTGAGGAGCTACTG-----TATCTTGAAGTATCTAGGGGACAACTGTTTCGAT 284
Query 118 GTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCCATTTCCTTCTTCC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 285 GTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCC-TTTG-T-CT-CC 340
Query 178 CTA-TTACGCCAAAGCTATTCTCTTCCC 204
|| ||||||| ||| || |||||||||
Sbjct 341 CTTGTTACGCCCAAGTTACTCTCTTCCC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5