BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320242
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24320.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1219 0.0
> AT2G24320.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:10345421-10346829 REVERSE LENGTH=1099
Length=1099
Score = 1219 bits (660), Expect = 0.0
Identities = 817/888 (92%), Gaps = 30/888 (3%)
Strand=Plus/Plus
Query 22 ATGGCGGCGAAA-TTCGCTTTCTTCCCACCGCCACCTACATACGGA-GTGAGTAAAGACG 79
||||| || ||| ||||||||||||||||||||||| |||||| || ||| |||||||||
Sbjct 1 ATGGCTGC-AAAGTTCGCTTTCTTCCCACCGCCACCAACATAC-GACGTGGGTAAAGACG 58
Query 80 AGGAGACCGGAAAGCTTATGTTCACCGGGATTACGCCAGAAAAAAGCATGGATGTTCATC 139
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 59 AGGAGACCGGAAAGCTTATGTTCACCGGGATAACACCAGAAAAAAGCATGGATGTTCATC 118
Query 140 AGCTTACCACCAAATCAGGCAACAAGGTCATTGCCACTTTTTGGAAACACCCTTTTTCTA 199
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 119 AGCTTACCACCAAATCTGGCAACAAGGTCATTGCCACGTTTTGGAAACACCCTTTCTCTA 178
Query 200 GATTTACTCTTCTTTATTCACATGGAAATGCCGCGGATCTCGGCCAAATGGTTGATCTCT 259
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 GATTCACTCTTCTTTATTCACATGGCAATGCCGCGGATCTCGGCCAAATGGTTGATCTCT 238
Query 260 TCATCGAGCTTCGTGCTCATCTCCGCGTCAACATTATGAGCTATGACTATTCAGGCTATG 319
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 TCATCGAGCTTCGAGCTCATCTCCGCGTCAACATTATGAGCTATGATTATTCAGGCTATG 298
Query 320 GAGTTTCAACAGGCAAGCCAACTGAGCTCAATACATACTACGATATCGAGGCTGTGTACA 379
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 299 GAGCTTCAACAGGCAAGCCAACTGAGCTCAATACGTACTATGATATCGAGGCTGTGTACA 358
Query 380 ATTGCTTGAGGAGCGAGTACGGGATCACGCAAGAGGAAATGATTCTATATGGTCAATCTG 439
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 359 ATTGCTTGAGGACCGAGTACGGGATCATGCAAGAGGAAATGATTCTATATGGTCAATCCG 418
Query 440 TTGGAAGCGGACCAACGTTGCATTTAGCGA-CTCGATTAAAGAGACTAAGAGGGATTATT 498
|||||||||||||||| ||||| ||||| | ||||| |||||||||||||||||||| ||
Sbjct 419 TTGGAAGCGGACCAACATTGCACTTAGC-ATCTCGAGTAAAGAGACTAAGAGGGATTGTT 477
Query 499 CTTCATAGCGCAATTCTCTCTGGCCTTAGAGTTCTATATCCTGTCAAAATGACATTCTGG 558
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 478 CTTCATAGCGCAATTCTCTCCGGCCTCAGAGTTCTGTATCCTGTCAAAATGACATTCTGG 537
Query 559 TTTGATATGTACAAAGTAAGCTTGATCTCAATTGTCTCTAACATTGAGAAGATACGCCAT 618
|| |||||||||||| || | || | | | || ||| ||||||||
Sbjct 538 TTCGATATGTACAAA--AA-C---AT-T-----G-----A-CA---AGA---TACGCCAT 573
Query 619 GTAACATGCCCTGTTCTTGTCTTACATGGAACAAAAGATGACATTGTGAACATCTCACAC 678
||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||
Sbjct 574 GTAACATGCCCTGTTCTTGTCATACATGGAACAAAAGATGATATTGTGAATATGTCACAT 633
Query 679 GGGAGGCGATTGTGGGAACTTGCAAAGGACAAGTATGATCCATTGTGGGTAAAAGGAGGA 738
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGGAAGCGATTGTGGGAACTAGCAAAGGACAAGTATGATCCATTGTGGGTAAAAGGAGGA 693
Query 739 GGGCATTGCAACTTGGAAACATACCCCGAGTACATAAAGCACGTGCGAAAGTTCATGAAC 798
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 694 GGGCATTGCAACTTGGAAACATACCCCGAGTACATCAAGCATATGCGAAAGTTCATGAAC 753
Query 799 GCAATGGAGAAACTCGCTCTCAACAATCCACCAAGCAAACAACAAAATGACGAGCCAAGC 858
|| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 754 GCCATGGAGAAACTCGCTCTCAACAATCCACCAAACAAACAACAAAACGACGAGCCAAGC 813
Query 859 ATCAAGGAAACTAAGCAGAATCGGTGCTTGAGATTCAGCAAAAGATAG 906
|||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 814 ATCAAGGAAACTAAACAAAATCGGTGCTTGAGATTCAGCAAAAGATAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5