BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320269
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24615.1 | Symbols: | Defensin-like (DEFL) family protein |... 296 6e-80
> AT2G24615.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:10461199-10462818 FORWARD LENGTH=255
Length=255
Score = 296 bits (160), Expect = 6e-80
Identities = 220/248 (89%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAGCAGTGTAAATGGTGTCGTG-TTTGTCGTCAGTTTAATGATTGTT-TTATTAA 58
|||||||||||| ||||||| |||| | | |||||||||| |||||| || |||||||
Sbjct 1 ATGGCTAGCAGTAAAAATGGTACCGTGCTCT-TCGTCAGTTTGATGATT-TTGTTATTAA 58
Query 59 TTTCGACA-G-TTACAA-CTTATTGTGAGAAAATACGAAGCAGGTCAGCACCACATGACA 115
|||||||| | || || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 59 TTTCGACAGGAGTAAAAGCTTATTGTGAGAGAGTACGAAGCAGGTCAGCACCACATGACA 118
Query 116 TTTGTAAGaaaaaaaaTGGCAATGCGTTGTGCAAAGAGACGTGTTGGATAAGAGAAACTT 175
|||||||||||||||||||||||||| |||||||||||| |||||||| || ||||| |
Sbjct 119 TTTGTAAGAAAAAAAATGGCAATGCGGTGTGCAAAGAGAAGTGTTGGACAATAGAAAAAT 178
Query 176 ATCAGAATGGAAGATGTCTAATTCTTCCAAAGACGACAAAATTAGATTGCTACTGCTACC 235
|||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 179 ATCAAAATGGACGATGTCTAATACTTCCAAAGACGACAAAATTGGATTGCTACTGCTACC 238
Query 236 ATTTCGAC 243
|||| |||
Sbjct 239 ATTTTGAC 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11913456513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5