BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320270
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05914.1 | Symbols: | Potential natural antisense gene, loc... 623 1e-177
AT3G44325.1 | Symbols: | transposable element gene | chr3:1599... 481 6e-135
AT4G29200.1 | Symbols: | Beta-galactosidase related protein | ... 305 4e-82
> AT2G05914.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT2G05915 | chr2:2263151-2264542 REVERSE
LENGTH=1392
Length=1392
Score = 623 bits (337), Expect = 1e-177
Identities = 709/882 (80%), Gaps = 51/882 (6%)
Strand=Plus/Plus
Query 11 CACCGCAAATCTCTTCGCAAGTC-TCGGACAGCCGCCGCATTCTTC-TT-CTGTCGTGGC 67
|||||||| | |||||||||| | || || |||||| | || | || ||||| ||||
Sbjct 455 CACCGCAATTGTCTTCGCAAG-CTTCAGATTGCCGCCTC--TCCCCTTTCCTGTCTTGGC 511
Query 68 AATCCAAAGTGAAACTAGGGTTTTCCCCAGTGGACCTA--TTCTCCAACTTTGGCCCAAT 125
| ||||||| |||||||||||||| ||||||||||||| |||| | ||||||||||
Sbjct 512 ATTCCAAAGAGAAACTAGGGTTTTTCCCAGTGGACCTACTTTCTTC--TTTTGGCCCAA- 568
Query 126 CCC-ACCAAGAAGGCCCAAGCCTATTAGTTGGTTTAAAAATCTTAAGGC-TAATATTCTC 183
||| | |||||||||||||| || | |||| |||| |||||||| | || | | ||
Sbjct 569 CCCTATTTAGAAGGCCCAAGCCCATCAATTGGATTAACTATCTTAAGACAAAAAAAT-TC 627
Query 184 AGGTCCGTTTTCATTA-TTCTTATGTTAAGCCCAAGTCATTATTTGTGTCGATCTCCTCT 242
||||| |||| | ||| ||| |||||||| ||||| ||| | |||||||||||| ||||
Sbjct 628 AGGTCTGTTTCCTTTATTTC-TATGTTAAATCCAAGACATAACTTGTGTCGATCTTCTCT 686
Query 243 ACTCCATGGTCGA-GGACTCTATGTGAGAGAGGTATCACCATTGTTGCCTTGGCTTTGCA 301
| ||| |||| | |||||| ||||||||||| |||||||||||||| |||| |||||||
Sbjct 687 AATCCGTGGT-TATGGACTCCATGTGAGAGAGTTATCACCATTGTTGTCTTGACTTTGCA 745
Query 302 TATATTCTATACGA-A-TCCTGGTATTAGTTGTTTTTAGGGACTTGTGGTATGCTTACAA 359
|||| | | | || | ||||||| |||||||| ||||||| ||| ||||||| ||||||
Sbjct 746 TATA-T-TGTGGGATATTCCTGGTTTTAGTTGTATTTAGGGGCTTATGGTATGTTTACAA 803
Query 360 AGGCTTGAAGAA-CTATGATTTAATTATCTCGAACCGTTTTTGCCGGAGTGTGAATTGTG 418
|||||||||||| || |||| || |||||||||||| || ||||| ||||| |||||
Sbjct 804 AGGCTTGAAGAACCT-TGATCGAAATATCTCGAACCGATTGTGCCGAAGTGTTTTTTGTG 862
Query 419 G-TATTGGACTAGTT-TGGTTCAGT-GTCCAAATT-T-CACCAAGCAGCTCAT--A-TGT 470
| | || ||| | || || || | | | || ||| | | |||| ||||||| | ||
Sbjct 863 GCT-TTCGACCACTTGTGCTT-A-TCGACC--ATTATGCTCCAATTAGCTCATCGAGCGT 917
Query 471 CGTTTTCAAGCATCTTAACC-TCACCACCATCTCCATCATTC-AGATCCTATGC-TACAA 527
|| | ||||||| | | ||| |||||| ||||||||||| || || ||||| | | ||
Sbjct 918 CGCTCTCAAGCAGCGT-ACCTTCACCATCATCTCCATCA-TCAAGTTCCTAAACGT-TAA 974
Query 528 AGTTCATGTCGCGA-TTTATCGGAGA-GATCTAAACCTGTT-GCTTTGGGTTTCAAAGCT 584
||||| | | || | ||||| ||||| | ||||||||| || ||||||||||||||||||
Sbjct 975 AGTTCTTATTGC-ATTTTATTGGAGATG-TCTAAACCT-TTCGCTTTGGGTTTCAAAGCT 1031
Query 585 ATCCTCAACCGACTATAGAACCATAGTCTCTCGAATCCTTGTTATTGCGCTACCATGGGT 644
||| |||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||| |
Sbjct 1032 ATCATCAATCGACTATAGCACCATAGTCTCCCGAATCCTTGTTATTGTGCTACCTTGGTT 1091
Query 645 ACTGCAGCTCACTCCGATGAGAAACGTAACATTGATTCATTCAG-CAACGTCACAGCGTC 703
| |||||||| || | |||||||| || ||||||||| ||| | |||||| ||| |||
Sbjct 1092 AGTGCAGCTCTCTATGTTGAGAAACTTATCATTGATTCCTTC-GTTAACGTCTCAGGGTC 1150
Query 704 TTTTGACCATGACCAATCTGTCGTCATTCGAATCCCTCGAGGATGATCACTCGATTCACC 763
| |||||||||| |||||| |||| ||||||||| ||||||||| | |||||||||||
Sbjct 1151 CTATGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACC 1210
Query 764 GTGATCTCACATGTCTCAATGTGCTTCCAAGCCCTTGTCTCAAAGCTCTCATGGATTTAA 823
|||||||||| ||| |||||| |||||||||| | || |||||||||||||||||||||
Sbjct 1211 GTGATCTCACTTGTTTCAATGCGCTTCCAAGCTATGGTTTCAAAGCTCTCATGGATTTAA 1270
Query 824 AATCGATGAACCTTATCTATCTTTTTATGGCATTGGGGAATG 865
|||||||| | | ||||| || ||||||| ||||||||||||
Sbjct 1271 AATCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG 1312
> AT3G44325.1 | Symbols: | transposable element gene | chr3:15996572-15999922
REVERSE LENGTH=3351
Length=3351
Score = 481 bits (260), Expect = 6e-135
Identities = 691/890 (78%), Gaps = 65/890 (7%)
Strand=Plus/Minus
Query 2 TGATCCCTGCACCGCAAATCTCTTCGCAAGTCTCGGACAGCCGCCGCATTCTTCTTCT-G 60
||||| |||| ||||||||| ||| || || ||||| | ||| || | || ||| |
Sbjct 2266 TGATCTCTGCGTTGCAAATCTCATCGTAATTCACGGACGGTGGCCACA-ACCTCCTCTCG 2208
Query 61 -TCGTGGCAATCCAAAGTGAAACTAGGGTTTTCCCCAGTGGACCTA-TTCTCCAACTTTG 118
|| |||||||||| |||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 2207 ATC-TGGCAATCCACAGTGAAACTAGGGTTTTCCCCAGTGGACCTTGTT-TCCAAATTTG 2150
Query 119 GCCCAATCCCA-CCAAGAAGGCCCAAGCCTATTAGTTGGTTTAAAAATCTT-AAGGC-TA 175
|||| ||||| |||||||||||||| || || | | | ||||| || || || ||
Sbjct 2149 ACCCA-TCCCATCCAAGAAGGCCCAAACCCATCAAATA-TGCAAAAAA-TTCAAAGCCTA 2093
Query 176 ATATTCTCAGGTCCGTTTTCATTATTCTTATGTTAAGCCCAAGTCATTATTTGTGTCGAT 235
||| ||||||||| |||||||| | | |||| ||||||||| | ||| ||| ||||||
Sbjct 2092 ATACTCTCAGGTCTGTTTTCATAAGCCCTATGCTAAGCCCAAAACTTTACTTGCGTCGAT 2033
Query 236 CTCCTCTACTCCATGGTCGAGGACTCTATGTGA-GAGAGGTATCACCATTGTTGCCTTGG 294
|| || ||||| |||| | | |||| || || |||||||||||||||| || ||||
Sbjct 2032 CTTCTTTACTCTGTGGTTGTG-ACTCCATC-GAAGAGAGGTATCACCATTAACGCTTTGG 1975
Query 295 -CTTTGCATATATTCTATACGAATCCTGGTATTAGTTGTTTTTAGGGACTTGTGGTATGC 353
|||| ||| || ||| | | || ||||||||| |||| | ||||||||||||||||||
Sbjct 1974 TCTTT-CATTTACTCTTTGCAAACCCTGGTATTTGTTGCTCTTAGGGACTTGTGGTATGT 1916
Query 354 TTAC-AAAGGCTTGAAGAACTATGATTTAAT-TATCTCGAACCGTTTTTGCCGGAG-TGT 410
|||| |||| |||||||| |||| || || | ||||||||| ||| |||| || | | |
Sbjct 1915 TTACGAAAG-CTTGAAGATCTATAATCTA-TCTATCTCGAATCGTCCTTGCTGGTGGTTT 1858
Query 411 GAATTGTGGTATTGGACTAG--TTTGGTTCAGTGTCCAAAT-TTCACCAAGCAGCTCATA 467
|||||| || ||| ||| ||| ||| | || |||| | ||| |||||||| || ||
Sbjct 1857 -AATTGTTGTCTTGTTCTAACCTTTCGTTAA-TGACCAA-TGTTCCCCAAGCAGTTCTTA 1801
Query 468 TGTCGTTTTCAAGCATCT-TAACCT-CACCACCATCTCCATCATTCAGATCCTATGCTA- 524
|||||||| |||| | | || ||| || ||||||||||||||| ||||||||||||||
Sbjct 1800 TGTCGTTTACAAGTTT-TGTA-CCTTCATCACCATCTCCATCATCCAGATCCTATGCTAT 1743
Query 525 CAAA-GTTCATGTCGCGATTTATCGGAGAGATCTAAACCTGTT-GCTTTGGGTTTCAAAG 582
| || ||| || | || ||||| || ||||| |||| | ||||||||||| ||||
Sbjct 1742 CCAATGTT--TGGATCTATCTATCGAAGTGATCTCTACCT-TCCGCTTTGGGTTTTAAAG 1686
Query 583 CTATCC-TCAACCGACTATAGAACCATAGTCTCTCGAATC-CTTGTTATTGCGCTACCAT 640
| ||| |||||||||||||| |||||||||||| ||||| || || || || || |
Sbjct 1685 CC-TCCCTCAACCGACTATAGCACCATAGTCTCTTGAATCTCT-GTCATAGCATTATTGT 1628
Query 641 GGGTA-CTGCAGC-TCACTCC-GATGAGAAACGTAACATTGATTCATTCAGCAACGTCAC 697
||||| | ||| | | ||| || ||||| | |||| ||||||||||| ||||||| |
Sbjct 1627 GGGTATC-GCAACGTG--TCCTGACGAGAACCTTAACCTTGATTCATTCTTCAACGTCGC 1571
Query 698 AGCGTCTTTTGACCATGACCAATCTGTCGTCATTCGAATCCCTCGAGGATGATCACTCGA 757
||||||||| ||||||||||||||| ||||| ||| || || | || | |||||
Sbjct 1570 AGCGTCTTTCGACCATGACCAATCTATCGTCCTTCAAA------GA--A-GACCTCTCGA 1520
Query 758 TTCACCGTGATCTCACATGTCT-CAATGTGCTTCCAAGCCCTTGTCTC-AAAGCTCTCAT 815
|||||||||||||||| ||| | || || |||||||||||||||| || |||| ||||||
Sbjct 1519 TTCACCGTGATCTCACTTGT-TGCAGTGCGCTTCCAAGCCCTTGT-TCCAAAGTTCTCAT 1462
Query 816 GGATTTAAAATCGATGAACCTT-ATCTATCTTTT-TATGGCATTGGGGAA 863
|||| || |||||| || |||| |||| |||| | | |||||||||||||
Sbjct 1461 GGATCTACAATCGAAGA-CCTTTATCTTTCTTGTCT-TGGCATTGGGGAA 1414
> AT4G29200.1 | Symbols: | Beta-galactosidase related protein
| chr4:14398054-14400198 REVERSE LENGTH=1374
Length=1374
Score = 305 bits (165), Expect = 4e-82
Identities = 710/959 (74%), Gaps = 93/959 (10%)
Strand=Plus/Plus
Query 7 CCTGCACCGCAAATC-TCTTCGCAAGTCTCGGACAGCCGCCGCATTCTTCTTC--TGTCG 63
||||| | ||||||| || |||| ||| ||||||||||||| ||| | || ||
Sbjct 454 CCTGCGCTGCAAATCATC-TCGCCTTTCTTGGACAGCCGCCGC--TCTACCTCAGCGTTT 510
Query 64 TGGCA-ATCCAAAGTGAAACTAGGGTTTTCCCCAGTGGACCTA-TTCTCCAACTTTGGCC 121
||||| || | | ||||||||||||||||||||||||||||| || || | |||||
Sbjct 511 TGGCACCTCGACA-TGAAACTAGGGTTTTCCCCAGTGGACCTAGTT-TCTTTCGCTGGCC 568
Query 122 CAATCCCACCAAGAAGGCCCAAGCCTAT-TAGTTGGTTTAAAAATCT-TAAGGCTAATAT 179
|| | | || ||||||||||| || | |||| |||| || | | ||||||| |||
Sbjct 569 CATTTCTTCCTTTCAGGCCCAAGCCCATCT-GTTGTTTTAGAACT-TGTAAGGCTTTTAT 626
Query 180 TCTCAGGTCCGTTTTCATTA-TTCTTATGTTAAGCCCA--AGTCATTATTTGTGTCGATC 236
|||||| || | |||| ||| |||| |||||| ||||| | || || ||||||||||||
Sbjct 627 TCTCAGATCTGATTTCTTTAATTCT-ATGTTAGGCCCATTAATC-TT-TTTGTGTCGATC 683
Query 237 TCCTCT-ACTCCATGGTCGA-GGACTCTATGTGAGAGAGGTATCACCATTGTTGCCTTGG 294
|||||| | || |||| | | |||| | || ||| |||| ||||||||| | | ||||
Sbjct 684 TCCTCTTA-TCAATGGCC-ATGGACACCATTTGATAGAGATATCACCATGGAGGTTTTGG 741
Query 295 CT-TTGCATATATTC-TATACGAATCCTGGTATTAGTTGTTTTTAGGGACT-TGTGGTAT 351
| || ||| ||| | | | ||||||||||| |||| | | | |||| | | ||||| |
Sbjct 742 TTCTT-CATTTAT-CATTTGCGAATCCTGGTTTTAGCTATATCTAGGAA-TGTGTGGCCT 798
Query 352 GC-TTACAAAGGCTTGAAGAACTATGAT-T-TAATTAT-CTCGAACCGTTTTTGCCGGAG 407
| || ||||| |||||||| || | | | ||||| | || ||| || ||||| |
Sbjct 799 -CATTCCAAAGTCTTGAAGACCT-TC-TCTCTAATTTTTCT-GAATTGTACTTGCCTTTG 854
Query 408 TGTGAATTGTGG-TATTGGACTAGTTTGGTT--CAGT-G-TCCAAATT-TCACCAAGCAG 461
||| || ||||| | ||| | || | |||| || | | || || | |||||||| ||
Sbjct 855 TGTCAAATGTGGCT-TTGAATTA-TG-GGTTTTCA-TCGCTC-AA-TGGTCACCAAGTAG 908
Query 462 CTCATATGTCGTTTTCAAGCATCTTAACCTCACCACCATC-TCCATCATTCAGATCCTAT 520
||||| | ||| ||||||| || | || | | ||||| || || |||| | | |
Sbjct 909 CTCATCTATCGCCTTCAAGC-TCATCAC-T-ATGTCCATCATC-ATGTTTCA--T--TGT 960
Query 521 GCTACAAAGT-TCATGTCGCGATTTATCGGAGAGATCTAAACCTGTTGCT-TTGGGTT-T 577
|| || ||| | ||| ||| ||| |||||||| | | ||| ||| | |||| | |
Sbjct 961 -CT-CATAGTGT-ATGCCGCTATTGATCGGAGATTTGTTTGCCTTTTG-TGTTGGATCCT 1016
Query 578 CAAAGCTATCCTCAACCGACTATAGAACCATAGTCTCT-CGAATCCTTGTTATTGCGCTA 636
||||||| ||| |||||||||||||||||||||| || |||||||||| ||| | |
Sbjct 1017 -AAAGCTAACCTTAACCGACTATAGAACCATAGTC-CTTCGAATCCTTGCTATC-CTTTT 1073
Query 637 -CCATGGGTACTGCAGCTCA-CTCCGATGAGAAACGTA-A-CATT-GAT-TCATTCAGCA 690
|| |||||| ||||||| | | ||| ||||| | || | | || ||| || || ||
Sbjct 1074 TCCGTGGGTATTGCAGCT-AGCCCCGGTGAGAT-C-TATAGC-TTCGATGTCTTTGT-CA 1128
Query 691 ACGTCAC-AGCGTCTTTTGACCATGACCAATCTGTCGTCATTCGAATCCCTCGAGGATGA 749
||||||| | |||| |||||| ||||||| |||| ||| ||||| | ||||||||||
Sbjct 1129 ACGTCACTA-CGTCCCTTGACCGTGACCAACCTGTTGTCCTTCGACTATTTCGAGGATGA 1187
Query 750 TCACT-CGATTCACCGTGATCTCACATGTCT-CAATGTGCTTCCAAGCCCT-TGTCTCAA 806
|| || ||||| || |||| ||||||||| | || |||||||| || | || |||||
Sbjct 1188 TC-CTTCGATTTACTGTGACCTCACATGT-TGCACTGTGCTTCTTTGCT-TATGCCTCAA 1244
Query 807 AGCTCTCATGGATTTAAAATCGATGAACCTTATCTATCTTTTTATGGCATTGGGGAATGC 866
|||||||||||| || ||||||||| || |||||| ||||||||||| |||||||||| |
Sbjct 1245 AGCTCTCATGGAATTCAAATCGATGCACTTTATCTTTCTTTTTATGGTATTGGGGAATAC 1304
Query 867 TTTTTGTTGTAATGTTTTAAACTTTGGGTTTCTTGAAATTCT-TCTCTTTGTAAATGTT 924
|||||||||||| ||||| ||||| ||| ||| ||| ||| | |||| |||| ||||
Sbjct 1305 CGTTTGTTGTAATGCTTTAATCTTTGAGTT-CTT-AAACTCTATTTCTT-GTAATTGTT 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5