BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320274
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24690.1 | Symbols: | Transcriptional factor B3 family prot... 1332 0.0
> AT2G24690.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10499551-10503140 REVERSE LENGTH=2364
Length=2364
Score = 1332 bits (721), Expect = 0.0
Identities = 954/1062 (90%), Gaps = 34/1062 (3%)
Strand=Plus/Plus
Query 123 ACTGCGTCTTCCGATGCAATTCACGAGGGAGAATGGGATTAACAAGCCTGGGAAGATATA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACTGCGTCTTCCGATGCAATTCACGAGGGAGAATGGGATTAACAAGCCTGGGAAGATATA 422
Query 183 TTTGTTGGGTAAAGATGGTTCAAAGTGGCTTGCAAATCTTCTTTCGGAAAACAACAGAGG 242
|||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 423 TTTGGTGGGTAAAGATGGTTCTAAGTGGCTTGCAAATCTTCTTTTGGAAAACAACAGAGG 482
Query 243 AAGAATGACTTTGGGAGATGGCTGGAAAAGTTTTGTTAAAGCAAACGGTTTAAAGACGGG 302
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 483 AAGAATGACTTTAGGAGATGGTTGGAAAAGTTTTGTTAAAGCAAACGGTTTAAAGACTGG 542
Query 303 TGATACCTATACATTCAAGTTA-TATTGGGAAGACACAATTCCTGTGCTTAGTTTGTGCT 361
|||||||||||| ||||||||| | | |||||||||||| ||||||||| |||||||| |
Sbjct 543 TGATACCTATACGTTCAAGTTACTGT-GGGAAGACACAACTCCTGTGCTCAGTTTGTGTT 601
Query 362 CTGAAGAGTACAACACTGACACAAGAGTAGGAGAAGAGTGTTCGAAAGAGTCTCTTCCCA 421
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 602 TTGAAGAGTACAACACTGACACAAGAGTAGGAGAAGAGTCTTCGAAAGAGTCTCTTCCCG 661
Query 422 CAGAGCCTAGTAGCCAAGAAAAGATCATTAAAGATGACAACAACAAACATGAATCCAACA 481
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 662 CAGAGCCTAGTAGCCAAGAAAAGATCGTTAAAGATGACAACAACAAAGATGAA---A--- 715
Query 482 AAGACGAAAGCAGCTTATGGAAGAGAGAGGATAATCATCTGAGATGCATAGATTCAACTT 541
| | | ||| | |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 716 --G-C-A--GCA-C--ATGGAAGAGAGAGGGTAATCATCTGAGATGCAAAGATTCAACTT 766
Query 542 CACCAAGCGAGAACCGGAGCCT-GACATTAACAATCACGCCTGATAGTCTCGAACATGGT 600
|||||||| ||||| | | ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 767 CACCAAGCCAGAACTGCA-CCTTGACAGTAACAATCACGCCTGATAGTCTCGAACATGGT 825
Query 601 AGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAACATGAACAAGCCCGGAGAGATA 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 826 AGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAGCATGAACAAGCCCGGGGAGATA 885
Query 661 ACTCTTTTAGGTAAAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGAAAGAAGAGG- 719
||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 886 ACTCTTTTAGGTACAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGAAAAAA-AGGG 944
Query 720 AAGAATGAGTTTGGGGAAGGGCTGGAAAGATTTTGCTAAAGCAAATGGCGTAAAGACGGG 779
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 945 AAGAATGAGTTTGGGAAAGGGTTGGAAAGATTTTGCTAAAGCAAATGGCTTAAAGACGGG 1004
Query 780 CGATTCCATCACGTTGGAGTCAATATGGGAAGACACAACTCCTGTGCTCAAGTTGCTTA- 838
|||||||| || |||||| ||||||||||||||| ||||||||||||| || | |
Sbjct 1005 TGATTCCATTACATTGGAGCCAATATGGGAAGACAGGACTCCTGTGCTCA-GTA--TAAA 1061
Query 839 GTATAGAA-TC-TA--G--CAGTGGTCATTTTTCTAAAGAATCTCTTTCCGTAGAACCTA 892
|| ||| | | || | || | | | ||||| || |||||||||||| || ||||||
Sbjct 1062 GTCTAGCAGTGGTAAAGGGCAAAG-TGAGTTTTCCAAGGAATCTCTTTCCATAAAACCTA 1120
Query 893 GTAGTGGAAACATGACTGAGAAAGCAGaaaaaaaCAGAGAAACAAGCAGAAAGTATCCTC 952
||||||||||||||||| |||||| ||| || ||||||||| ||||||||||||||||||
Sbjct 1121 GTAGTGGAAACATGACTAAGAAAGTAGAGAACAACAGAGAAGCAAGCAGAAAGTATCCTC 1180
Query 953 CTAGAAGTAGAGAATCATCTTCAGCAATCGAAAACCAATTCATGGCATTAACACCT-TCA 1011
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1181 CTAGAAGTAGAGAATCATCTTCAGCAATCCAAAACCAATTCATGGCATTAACACCTCT-A 1239
Query 1012 TGTGATATAATTAGCCAGGTCGCTCATGATCTTCGAATTGGCGAGGTCATCATTTTCAGA 1071
|||||||| |||||||||| |||||||||||| | || || |||||||||| |||||||
Sbjct 1240 CGTGATATAGTTAGCCAGGTTGCTCATGATCTTAGCATCGGTGAGGTCATCAATTTCAGA 1299
Query 1072 CATGAAGGAGATAATATGTTACAAGTCTCAGATTTGGGACCCAATTGTTGTGGTATTCGA 1131
||| |||||||||||||||| | ||||||||||||||| ||||||||||||| ||| |
Sbjct 1300 CATAAAGGAGATAATATGTTGCGGGTCTCAGATTTGGGATCCAATTGTTGTGGGGTTCAA 1359
Query 1132 GATGTACCGGCTCCAAGCAGCAACAATGATCATGACAACATC 1173
||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 1360 GATTTACTGGCTCCAAGCAGTAACTATGATCATGACAACATC 1401
Score = 636 bits (344), Expect = 0.0
Identities = 488/552 (88%), Gaps = 31/552 (6%)
Strand=Plus/Plus
Query 1157 ATGATCATGACAACATCGAGCATCCGAGTAAGAAGAAAGTGAAGAAGAACAATCCAGAAA 1216
||| |||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1472 ATGCTCATGACAACTTTGAGCCTCCAAGTAAGAAGAAAGTGAAGAAGAACAATCCAGAAA 1531
Query 1217 CAGAAGCAGATTATTTATCAGACCACTCTTGTTCTGTAGCCCATGTCACAACTTCGAGTC 1276
||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1532 TGGAAGCAGATTATTTATCAGACCACTCTTGTTTTGTATCCCATGTCACAACTTCAAGTC 1591
Query 1277 TACACGCAAATGCATTGAGCCTAGCAGTAAAAGAGTCTATAACCATAGAGCCTAGCATAG 1336
||||| ||||||| |||||||||| ||| ||||||||| | ||||||||||||||||
Sbjct 1592 TACACACAAATGCGTTGAGCCTAGAAGTGAAAGAGTCTCTTCCCATAGAGCCTAGCAT-- 1649
Query 1337 ATGACAACAACAAAGATGAAAGTACCAAAGAAGAAAACGACATAGAGGAAAAAAGCAACA 1396
| | ||| | || || | | | || | || | || || || || ||| |
Sbjct 1650 -T-A-AAC--C-AA-AT---A-T--C--AG-TG--AA-G--AT-GA--CAACAA-CAA-A 1683
Query 1397 -ACGAAAACAACATAGAGGAGAGCAGCTCATTTGAAAGAGAGAAGAATCATCGGATATGT 1455
| ||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1684 GAGGAAGACATCATAGAGGAGAACAGCTCATTTGAAAGAGAGAAGAATCATTGGATATGT 1743
Query 1456 ATAGATTCGATTTCATCAAGCCACAACCGATTTCTGACATTAACAATCACACCTGACAGT 1515
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1744 ATAGATTCAATTTCATCGAGCCAAAACCGATTTCTGACATTAACAATCACACCTGACAGT 1803
Query 1516 CTCAAACATGGTAGACTGCGTCTTCCACTGCAATTCATGACGGAGAATAGCATGAATAAG 1575
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1804 CTCAAACATGGTAGACTGCGTCTTCCACTGCAATTCATGATAGAGAATAGCATGAATAAG 1863
Query 1576 CCCGGAGAGATAACCGTGTTAGGTAAAGATGGTGCAAAGTGGCTGGTAAGTCTTCTACTG 1635
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1864 CCCGGAGAGATAACTGTGTTAGGTAAAGATGGTGCGAAGTGGCTGGTAAGTCTTCTACTG 1923
Query 1636 GAAAGAAGAGGAAGAATGAGTTTGGATGCTAGCAGTGGACACA-AGACAAGGGAAGCAGA 1694
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1924 GAAAGAAGAGGAAGAATGAGTTTGGATGCTAGCAGTGGACA-AGAGACCAGGGAAGCAGA 1982
Query 1695 GAAAAACAGAGA 1706
||||||||||||
Sbjct 1983 GAAAAACAGAGA 1994
Score = 460 bits (249), Expect = 2e-128
Identities = 292/313 (93%), Gaps = 1/313 (0%)
Strand=Plus/Plus
Query 1697 AAAACAGAGATTCATCTTCAGATATCGAAAACCGATTCCTTACATTAACACTTGCACCTG 1756
||||| |||||||||| |||||| || ||||||||||||||||| |||||||||||||||
Sbjct 2043 AAAAC-GAGATTCATCGTCAGATGTCAAAAACCGATTCCTTACACTAACACTTGCACCTG 2101
Query 1757 AAGATGTCAAGGATGGTAATTTGCATCTTCCAAGTCAATTCATGAGAATTAATGGCATCA 1816
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2102 AAGATGTCAAGGATGGTAATTTGCATCTTCCTTGTCAATTCATGAGAATTAATGGCATCA 2161
Query 1817 ACAAGCCTGGAAAGATAACTTTGTTGGGTAGAGGCGGTTTGAAGTGGTTTGCATATCTAT 1876
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2162 ACAAGCCTGGACAGATAACTTTGTTGGGTAGAGGCGGTATGAAGTGGTTTGCATATTTAC 2221
Query 1877 TGTCAAGAGATGGAACTGTCGTTTTGGGAAATGGTTGGAAAGGTTTCTGCGAGGCGAATG 1936
||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 2222 TGTCAGGAGATGGAACTGTCGTTGTGGGAAATGGTTGGAAAGGTTTTTGTGAGGCGAATG 2281
Query 1937 GCGTGATGTTAGGAGAGACTTTTATTTTGGAATTCGTTTCCAAAGAAGATGCAAATCATG 1996
| ||||||||||||||||||||| ||||||||||| || ||||||| ||| |||||||||
Sbjct 2282 GTGTGATGTTAGGAGAGACTTTTGTTTTGGAATTCATTCCCAAAGATGATACAAATCATG 2341
Query 1997 TATTTAAGTTCTA 2009
|||||||||||||
Sbjct 2342 TATTTAAGTTCTA 2354
Score = 241 bits (130), Expect = 3e-62
Identities = 221/264 (84%), Gaps = 10/264 (4%)
Strand=Plus/Plus
Query 1402 AACAACATAGAGGAGAGCAGCTCATTTGAAAGAGAGA-AG-AATCATCGGATATGTATAG 1459
||||||| ||| || |||||| || || |||||||| | ||||||| || ||| | ||
Sbjct 700 AACAACAAAGATGAAAGCAGCACA--TGGAAGAGAGAGGGTAATCATCTGAGATGCAAAG 757
Query 1460 ATTCGATTTCATCAAGCCACAACCG-ATTTCTGACATTAACAATCACACCTGACAGTCTC 1518
|||| | |||| ||||||| ||| | | | ||||| |||||||||| ||||| ||||||
Sbjct 758 ATTCAACTTCACCAAGCCAGAACTGCACCT-TGACAGTAACAATCACGCCTGATAGTCTC 816
Query 1519 AAACATGGTAGACTGCGTCTTCCACTGCAATTCATGACGGAGAATAGCATGAATAAGCCC 1578
||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 817 GAACATGGTAGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAGCATGAACAAGCCC 876
Query 1579 GGAGAGATAAC-CGTGTTAGGTAAAGATGGTGCAAAGTGGCTGGTAAGTCTTCTACTGGA 1637
|| |||||||| | | ||||||| |||||||||||||||| ||| |||||||||||| ||
Sbjct 877 GGGGAGATAACTCTT-TTAGGTACAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGA 935
Query 1638 AAGAAGAGG-AAGAATGAGTTTGG 1660
|| || ||| ||||||||||||||
Sbjct 936 AAAAA-AGGGAAGAATGAGTTTGG 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101254499265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5