BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320288
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24761.1 | Symbols: | pseudogene of self-incompatibility pr... 649 0.0
> AT2G24761.1 | Symbols: | pseudogene of self-incompatibility
protein-related protein | chr2:10549774-10550230 FORWARD LENGTH=457
Length=457
Score = 649 bits (351), Expect = 0.0
Identities = 425/460 (92%), Gaps = 7/460 (2%)
Strand=Plus/Plus
Query 1 ATGATAAACTCATCTAAAGGAAATCTCATATCCATTATGTCCTCAAAATTTACAATTTCT 60
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||
Sbjct 1 ATGATAAACTCATCTAAAGGAAATCTCATATCCACTATGTGCTCAAAATTTACTATCTCT 60
Query 61 ATAGTGGTGATATCCTTT-ATTTGTTCAGAAGCTCTACAACAAGATAGACAACTGATTTC 119
||||||||||||| |||| |||||||||||||||||| |||| |||||| ||||||||||
Sbjct 61 ATAGTGGTGATAT-CTTTCATTTGTTCAGAAGCTCTAGAACACGATAGAGAACTGATTTC 119
Query 120 GATAACAGGACCTCTCATGACAGTCTCAATCATAAATGAAAATGATTATCATCTTGGAG- 178
|||||||||||||||||||||||||| |||| |||||||||||| ||| || ||||||
Sbjct 120 AATAACAGGACCTCTCATGACAGTCTCGATCAAAAATGAAAATGACTATTATTTTGGAGT 179
Query 179 TCCATTGTAAATCCGCAAATAAAGATTTCGGTTTTCGCCTTCTTAAAAAAGGTGAAATAT 238
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCATTGTAAATTTGCAGATAAAGATTTCGGTTTTCGCCTTCTTAAAAAAGGTGAAATAT 239
Query 239 ATGAATGGAAATTTCATAATAAT-TTGACGAAAACTACACTCTATTTTTGTGGATTTCAT 297
||||||| |||||||||| |||| || |||||||||||||| ||||||||||||||| ||
Sbjct 240 ATGAATGAAAATTTCATATTAATATT-ACGAAAACTACACTATATTTTTGTGGATTTAAT 298
Query 298 GACGGACAAATAGATAAAGGTATTTTTGACATTTACATAGCGCTTAG-GAATGAGGAAAG 356
|||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 299 GACGGACAGATAGATAAAGGTACTTTTGACATTTACATAGCGCTTAGAGA-TGAGGAAAG 357
Query 357 ATGTAAAATCTGTACATGGAAAGCAGTAAAAGATGGTATATATGGATATAGCGACAAACA 416
||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 ATGTAAAATTTGTACATGGGAAGCAGTAAAAGATGGTATTTATGGATATAGCGACAAACA 417
Query 417 TCCTGAACCAGCTTTACTATTTTACAAGTGGTTAAAATAG 456
|||| ||||||||||||| ||||| |||||||||||||||
Sbjct 418 TCCTCAACCAGCTTTACTGTTTTATAAGTGGTTAAAATAG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5