BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320322

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25185.1 | Symbols:  | Defensin-like (DEFL) family protein |...   466    5e-131


> AT2G25185.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:10731622-10732024 FORWARD LENGTH=309
Length=309

 Score =  466 bits (252),  Expect = 5e-131
 Identities = 291/310 (94%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  1    ATGTTGACATCAAAAGCAACAATGCTCATTTTGTTCGCTCTCTTTCTTTCCGGCATATTG  60
            |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGTCGGCATCAAAAGCAACAATGCTCATTTTGTTCGCTCTCTTTCTTTCCGACATATTG  60

Query  61   TTGGAGAGCATTCCTAGAGCTGAAGCTCAGTTGATAGTTCCATGCAAGACATCAGAACAA  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGGTGAGCATTCCTAGAGCTGAAGCTCAGTTGATAGTTCCATGCAAGACATCAGAACAA  120

Query  121  TGTAAATCGATTCGATGTTCTAACGGAAGCGCGCAATGTGTGAACAAACAATGTCAATGT  180
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct  121  TGTAAATCGATTCGATGTTCTAATGGAAGCGCACAATGTGTGAACAAACAATGCCAATGT  180

Query  181  CCGAGTCTCAAACAGATTAATTCGATGATG-ACTGTGTCGTGCAAGACGGTCTCTGATTG  239
            || || |||||||||||| | ||| ||| | | |||||||||||||||||||||||||||
Sbjct  181  CCAAGCCTCAAACAGATTTACTCGGTGACGGA-TGTGTCGTGCAAGACGGTCTCTGATTG  239

Query  240  TGCTGCTTCTCATCAATGCCCGCCTGGTTTATATGCTTGTGTTGAAGGAAAATGTATTTG  299
            || ||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct  240  TGTTGCTTCTCATCAATGCCCGACTGGTTTATCTGCTTGTATTGAAGGAAAATGTATTTG  299

Query  300  TTTGCCTTAG  309
            ||||||||||
Sbjct  300  TTTGCCTTAG  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5