BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320330
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25295.1 | Symbols: LCR81 | low-molecular-weight cysteine-ri... 300 4e-81
> AT2G25295.1 | Symbols: LCR81 | low-molecular-weight cysteine-rich
81 | chr2:10769933-10770421 FORWARD LENGTH=240
Length=240
Score = 300 bits (162), Expect = 4e-81
Identities = 204/224 (91%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTTCGAAGATCTCCATACATTTTCATTGCAGTTTCTTTCATTGCAATGTTCTTG 60
|||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1 ATGGATGTTCAAAGATCTTCATACATTTTCATTGCACTTTCTATCATTGCAATGTTCTTG 60
Query 61 ACCACAGGAGTAAGATCACAGCCGGTAAGAGATATTTGCCCAGGGGTATGCCATGCTGGA 120
| ||||||||||| | | ||| ||||||||||||||| ||||| || ||||||||||||
Sbjct 61 ATCACAGGAGTAA-AAC-CAG-AGGTAAGAGATATTTGTCCAGGAGTGTGCCATGCTGGA 117
Query 121 ATTGAACCAGACTGCGACACACTCTGCACTAGCTTAGGCTTTACTGGAGGCTATTGTCAA 180
|||||||||||||| ||||||||||||| |||| | || |||||||| || |||||||||
Sbjct 118 ATTGAACCAGACTGTGACACACTCTGCATTAGCATGGGGTTTACTGGGGGTTATTGTCAA 177
Query 181 GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5