BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320337
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25350.1 | Symbols: | Phox (PX) domain-containing protein |... 1895 0.0
AT4G32160.1 | Symbols: | Phox (PX) domain-containing protein |... 525 6e-148
AT2G25355.1 | Symbols: | PNAS-3 related | chr2:10801278-108037... 481 1e-134
AT2G25344.1 | Symbols: LCR14 | low-molecular-weight cysteine-ri... 169 1e-40
> AT2G25350.1 | Symbols: | Phox (PX) domain-containing protein
| chr2:10797599-10800756 FORWARD LENGTH=1932
Length=1932
Score = 1895 bits (1026), Expect = 0.0
Identities = 1292/1413 (91%), Gaps = 48/1413 (3%)
Strand=Plus/Plus
Query 235 AGAAGGTACTCTCTGGAGGACTGGATGACGAAGCTATTATCTAATATAGAATTGGCTAGA 294
||||||| |||||||||||| |||||||||||| | |||||| ||||||||||||| |||
Sbjct 388 AGAAGGTGCTCTCTGGAGGATTGGATGACGAAGTTGTTATCTGATATAGAATTGGCAAGA 447
Query 295 AGTGTTGTAGTTGCATCCTTCCTCGAACTAGAAGCTACTGCTAGGTCTGCATGCCAAGTT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AGTGTTGTAGTTGCATCCTTCCTCGAACTAGAAGCTACTGCTAGGTCTGCATGCCAAGTT 507
Query 355 GTAGATCAGAATGCTTCTGATTCCAATGATGATGGAAATATCACAAGCTTATCGTCTCTG 414
||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct 508 GTAGATCAGAATGCTTCCGATTCCAATGATGATGGAAATAGCACAAGCTTGTCGTCTCTA 567
Query 415 GTTCACCCAAATTTGAGCTTTTTACATTCTGGTGGCAGTTCTTTGCTCTCATCTGACTAT 474
|||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 568 GTTCACCC-------A-------A-ATTCTGGTGGCAGTTCTTTGCTCTCATCTGACTAT 612
Query 475 AGCAGCGATACTGCTTATGAAACATCTGAGCTTGGATCAGCAAGTTTAGGTCAGGATGAT 534
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 613 GGCAGCGATACTGCTTATGAAACATCTGAGCTCGGATCAGCAAGTTTAGGTCAGGATGAT 672
Query 535 GTTTCTGAAACTGGTACTGGAGATCTAACTTTGGATGCAGATCTGACAAATCCAACAGAG 594
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 673 GTTTCTGAAACTGATACTGGAGATCTAACTTTGGATGAAGATCTGACAAATCCAACAGAG 732
Query 595 AAGCTCGTCAAGTTTACCATGTCCAACATTGACAAGGGACTGAGTATGAGCCAAACTATT 654
||||| || ||||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct 733 AAGCTTGTAAAGTTTAGCATGTCCAACATTGACGAGGGACTGAGTATGAGTCAAACTATT 792
Query 655 ATCGAGCAGCTAGATGATTTTCCTAAGCACAGAGTCCACTTAGGATATGCCAATGATATC 714
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 793 ATCGAGCAGCTAGAAGATTTTCCTAAGCACAGAGTCCATTTAGGATATGCCAATGATATC 852
Query 715 ACAGAGGCAAATTTGTACAATGGAAAAGCTTCTAAAGGTGTATTTCGAGCAAACGACGAC 774
|||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 853 ACAGAGACGAATTCGTACAATGGAAAAGCTTCTAAAGGTGTATTTCGAGCAAACAACGAC 912
Query 775 TTACGACGTCTCTCTGAATCAGAAACAAGTCAATCAGTGATGCATGATAGAAAGCTTTCT 834
||||| ||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 913 TTACGGTGTCGCTCTGAATCAGAAACTAGTCACTCAGTGATGCATGATCGAAAGCTTTCT 972
Query 835 GC-TGAGAGCGCTAAC-GAGTTTCCATCACTAGCCGGTGAGACATCAA--TC-----TC- 884
| |||||||||| || | |||| | | |||||||||||||||||||| || ||
Sbjct 973 -CTTGAGAGCGCTGACGGGGTTT-CGTTACTAGCCGGTGAGACATCAACCTCTAGTATCT 1030
Query 885 T--G-------GT--AT--CCAGCTGGATG-TACATCATGGTATATCTGTTGGTGACCTG 930
| | || || ||||||||||| || |||||| ||||||||||||| |||||
Sbjct 1031 TGAGCTCCATTGTACATAGCCAGCTGGATGTTA-ATCATGATATATCTGTTGGTAACCTG 1089
Query 931 GAGATGCCGGGTAGTGGACGAATAGTTCTCCCGCTGAAAATGCTTAATAAATTAAATAGG 990
||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1090 GAGATACCGGGTAATGGACGAATAGTTCTCCCGCTGAAAATGCATAGTAAATTAAATAGG 1149
Query 991 ATTCTATTAACTATGAATGAGAGACTTGTCAATTCAAAAACAGACATGGAGGATCTTATA 1050
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1150 ATTCTATTAACTATGAATGAGAGACTTCTCAATTCAAAAACAGACATGGAGGATCTTATA 1209
Query 1051 GCGAGACTAAATCAAGAGACAGCGGTGAAGGAATATCTGAACAGAAAGGTTGATGATCTG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GCGAGACTAAATCAAGAGACAGCGGTGAAGGAATATCTGAACAGAAAGGTTGATGATCTG 1269
Query 1111 GAAGTGGAACTTGAAACTACTAAACAGAGAAACAAAGAGAATTTGGAACAAGCTTTGATG 1170
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1270 GAAGTGGAACTTGAAACTACTAAACAGAGAAACAAAGAGAATTTGGAGCAAGCTTTGATG 1329
Query 1171 ACTGAGA-AGCAGAGTGTTACCCAGATGCAGTGGGATATGGAAGAATTCAGGCAAAAAAC 1229
|| |||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1330 ACCGAGAGA-CAGAGTGTTACCAAGATGCAGTGGGATATGGAAGAACTCAGGCAAAAAAC 1388
Query 1230 TTTTGAGATGGAACTGAAGTTAAAGTCAAAAGAGGATAGGAGCTT-ACATGCTAAGCCTT 1288
||||||||||||||||||||||||||||||||||||| |||| || | || ||||| | |
Sbjct 1389 TTTTGAGATGGAACTGAAGTTAAAGTCAAAAGAGGATGGGAG-TTCAGATTCTAAGACGT 1447
Query 1289 CAGGAAACTCAACAATCGGTGAGAGCCATGAGCTGATACAAGAAATGGATGCCACAAAAC 1348
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1448 CAGGAAACTCAACAATCTCTGAGAGCCATGAGCTGTTACAAGAAATGGATGCCACAAAAC 1507
Query 1349 AGCAACTGGAAGATCTTTCTAGACGGTATGTTGAACTGGAGTCAAAATCAAAGGCAGACA 1408
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1508 AGCAACTGGAAGATCTTTCTAGACGGTATGTTGAACTGGAGGCAAAATCAAAGGCAGACA 1567
Query 1409 TAAAGGTGCTTGTCAGAGAGGTCAAATCCCTGAGACGTTCACATATGGAGCTAGAAAAGG 1468
|||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1568 TAAAAGTGCTTGTCAGAGAGGTCAAATCCCTGAGACGTTCACATATGGAAATGGAAAAGG 1627
Query 1469 AGCTGTCTCGATCTCTGACAGAGAAGTCAGACACTAAGAAACTCCTCCAACAGGAAAGGA 1528
| ||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1628 AACTGACTCGATCGCTGACAGAGAAGTCTGACACTGAGAAACTCCTCCAACAGGAAAGGA 1687
Query 1529 AAATAGTCGAGAACAAGCTAGAAGCAAGAAAAAAGTTGGT-TAGTGACTGCAAAATTCTC 1587
|||||||||||||| |||||||||||||| || | || | ||||||||| ||||||||
Sbjct 1688 TAATAGTCGAGAACACGCTAGAAGCAAGAAGAAGGCTG-TATAGTGACTGTGAAATTCTC 1746
Query 1588 CATGACAGGCTTAAAGTCAACAACACAAACTTG 1620
|| |||||||||||||| |||||||||||||||
Sbjct 1747 CACGACAGGCTTAAAGTGAACAACACAAACTTG 1779
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1631 CTGAAGTATCAAATGCCTTGCAAGATCAGATTGAG 1665
|||||||||||||||||||||||||||||||||||
Sbjct 1817 CTGAAGTATCAAATGCCTTGCAAGATCAGATTGAG 1851
> AT4G32160.1 | Symbols: | Phox (PX) domain-containing protein
| chr4:15528805-15533100 FORWARD LENGTH=2631
Length=2631
Score = 525 bits (284), Expect = 6e-148
Identities = 505/609 (83%), Gaps = 26/609 (4%)
Strand=Plus/Plus
Query 235 AGAAGGTACTCTCTGGAGGACTGGATGACGAAGCTATTATCTAATATAGAATTGGCTAGA 294
||||||| |||||| ||||| ||||| || |||||||||||| ||||||||||||| |||
Sbjct 642 AGAAGGTGCTCTCTTGAGGAGTGGATAACAAAGCTATTATCTGATATAGAATTGGCAAGA 701
Query 295 AGTGTTGTAGTTGCATCCTTCCTCGAACTAGAAGCTACTGCTAGGTCTGCATGCCAAGTT 354
||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||| |
Sbjct 702 AGTGTCGTAGTTGCATCCTTTCTTGAACTAGAAGCTGCTGCTAGGTCTGCATGCCAAGAT 761
Query 355 GTAGATCAGAATGCTTCTGATTCCAATGATGATGGAAATATCACAAGCTTA-TCGTCTCT 413
||||||||||||||||||||||||||| ||||| ||| || |||||| || ||| || |
Sbjct 762 GTAGATCAGAATGCTTCTGATTCCAATAATGATAGAAGTAGCACAAG-TTCGTCGCCTAT 820
Query 414 GGTTCACCCAAATTTGAGCTT-TTTACATTCTGGTGGCAGTTCTTTGCTCTCATCTGACT 472
||||||||||| ||||||||| ||| ||| ||||||||||| || ||| |||||||||
Sbjct 821 GGTTCACCCAAGTTTGAGCTTGTTT-CATGCTGGTGGCAGTACT---CTCACATCTGACT 876
Query 473 ATAGCAGCGATACTGCTTATGAAACATCTGAGCTTGGATCAGCAAGTTTAGGTCAGGATG 532
|| |||| |||||||||||||||||||||||| |||||||| ||||| |||| |||||||
Sbjct 877 ATGGCAGTGATACTGCTTATGAAACATCTGAGGTTGGATCACCAAGTGTAGGACAGGATG 936
Query 533 ATGTTTCTGAAACTGGTACTGGA-GATCTAACTTTGGATGCAGAT----CTG-A-CAAAT 585
|| ||||||||| |||||| ||| ||||||||| |||||| |||| || | |||||
Sbjct 937 ATATTTCTGAAATTGGTAC-GGAAGATCTAACTCTGGATGAAGATTTAACTTTAACAAAT 995
Query 586 CCAACAGAGAAGCTCGTCAAGTTTACCATGTCCAACATTGACAAGGGACTGAGTATGAGC 645
|||| |||||||||||| || |||| |||||||||||||||| |||| || ||||||
Sbjct 996 CCAATAGAGAAGCTCGTTAACTTTAGCATGTCCAACATTGACGAGGGGCTTTCAATGAGC 1055
Query 646 CAAACTATTATCGAGCAGCTAGATGATTTTCCTAAGCACAGAGTCCACTTAGGATATGCC 705
|||| ||| | ||||| || || || ||||| || || | ||||| || | |||||| |
Sbjct 1056 GAAACAATTCTAGAGCAACTTGAAGACTTTCCCAAACATAAAGTCCGCTCAAGATATGTC 1115
Query 706 AATGATATCAC-AGAGGCAA--ATTTGTACAATGGAAAAGCTTCTAAAGGTGTATTTCGA 762
||| ||||| | || || || || |||| |||||||| ||||| ||||| |||||||
Sbjct 1116 AATAATATC-CTAG-GG-AAGGATGTGTATAATGGAAATGCTTCAAAAGGCGTATTTCTT 1172
Query 763 GCAAACGACGACTT-ACGACGTCTCTCTGAATCAGAA--A-CAAGTCAATCAGTGATGCA 818
|| ||| | | || ||||| |||||||||| ||||| | ||| ||| ||||| |||||
Sbjct 1173 GCTAACAATGG-TTCACGACTTCTCTCTGAACCAGAACCATCAACTCACTCAGTAATGCA 1231
Query 819 TGATAGAAA 827
||| |||||
Sbjct 1232 TGACAGAAA 1240
> AT2G25355.1 | Symbols: | PNAS-3 related | chr2:10801278-10803722
FORWARD LENGTH=970
Length=970
Score = 481 bits (260), Expect = 1e-134
Identities = 280/290 (97%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1820 AAAGTGGAAAGGCTGCAGTATTTGGTCCCTTAAAAGATGGTTTCATGTTTGAAACCTCAA 1879
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 550 AAAGTGGAAAGGCTGCAGGATTTGGTCCCTTAAAAGATGGTTTCATGTTTGAAACTTCAA 609
Query 1880 CTGGTTTATCAAGAATGTTGTTGAGTTCACCAACTTGCCCGGTCCTTGAAGCTCTTGGGA 1939
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 CTGGTTTATCTAGAATGTTGTTGAGTTCACCAACTTGCCCGGTCCTTGAAGCTCTTGGAA 669
Query 1940 AGAAACTCTCGTTTGAGACTGCGTTTGGCTTAAATGGGAGATGTTGGGTGCATGCGGCTG 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AGAAACTCTCGTTTGAGACTGCGTTTGGCTTAAATGGGAGATGTTGGGTGCATGCGGCTG 729
Query 2000 CTCCTCGTATAGTGATTATCGTCGCCAATGCTTTGATGAATTCTGAAACTCTAAGTGGGA 2059
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 730 CTCCTCGTATAGTGATTATCGTCGCCAATGCGTTGATGAATTCTGAAACTTTAAGCGGGA 789
Query 2060 CGCAGCAGAGGATCATGGTAGAGAAATTGCTGGAGAAAATTTCAGACTGA 2109
| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 790 CACAACAGAGAATCATGGTAGAGAAATTGCTGGAGAAAATTTCAGACTGA 839
Score = 237 bits (128), Expect = 3e-61
Identities = 144/152 (95%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1665 GTATATACCTCGCCCTGAGGATCATGTTCTTGGCATTGTGGTAGATTGTAAGGGAGAAAA 1724
|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 326 GTATGTACCTCGTCCTGAGGATCATGTTCTTGGCATTGTGGTAGATTGTAAAGGAGAAAA 385
Query 1725 TTATTGGGTAGACATTAAAGGACCACAACTGGCTCTTTTACCTGTGCTTGCATTTGAAGG 1784
|||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 386 CTATTGGATAGACATTAAAGGACCACAATTGGCTCTTTTGCCTGTGCTTGCATTTGAAGG 445
Query 1785 AGCAAACAAAAGAAATTATCCCAAGTTTGAGG 1816
|||||||| |||||||||||||||||||||||
Sbjct 446 AGCAAACAGAAGAAATTATCCCAAGTTTGAGG 477
> AT2G25344.1 | Symbols: LCR14 | low-molecular-weight cysteine-rich
14 | chr2:10795135-10796039 FORWARD LENGTH=240
Length=240
Score = 169 bits (91), Expect = 1e-40
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGTTGACCAAAAAAGATGTTGGGCGACTCTAAAAGAAAACAATTGTGTTCACGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ATGAGTGTTGACCAAAAAAGATGTTGGGCGACTCTAAAAGAAAACAATTGTGTTCACGAT 135
Query 61 GAGTGCCGGTCCATGTGTTTGAAGAAAAATCCAAAAGGACATG 103
||||| || |||||||| || ||||||||||||||||||||||
Sbjct 136 GAGTGTCGTTCCATGTGCTTAAAGAAAAATCCAAAAGGACATG 178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5