BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320374
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25830.1 | Symbols: | YebC-related | chr2:11018716-11021699... 1552 0.0
> AT2G25830.1 | Symbols: | YebC-related | chr2:11018716-11021699
REVERSE LENGTH=1405
Length=1405
Score = 1552 bits (840), Expect = 0.0
Identities = 946/996 (95%), Gaps = 12/996 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTCCCATTGCTCTATGAGAGCAATCCTCCACAGATTCTCCAATGGCGTCTCTTCC 60
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 35 ATGGCCTCCCATTGCTCCATGAGAGTAATCCTCCTCAGATTCTCCAATGGCGTCTCTTCC 94
Query 61 AGATCCATTCTCAACTCCACTAAACATCGTCTTC----TC--ACCATGACCAActctctc 114
||||||||||||||||||||||| |||||||||| || |||||||||||| |||||
Sbjct 95 AGATCCATTCTCAACTCCACTAACCATCGTCTTCTTAGTCTTACCATGACCAACACTCTC 154
Query 115 tcttctctttcctcaatctct--cctcAC-ACTACTTCGCATTTCAC-G--GCGTCACAA 168
|| |||||||||||||||||| || ||| ||||||||||||||||| | |||||||||
Sbjct 155 TCGTCTCTTTCCTCAATCTCTCCCCACACTACTACTTCGCATTTCACGGCTGCGTCACAA 214
Query 169 CTATCAGATGACCAGAATTGCTTCCGAAAGCTTCAAGTCAGAAAGATTTCGATTTCAACT 228
| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 215 CAATCAGATGACCAGAACTGCTTCCGCAAGCTTCAACTCAGAAAGATTTCGATTTCAACT 274
Query 229 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGCCGAAAGGGGGCTCAAGATTCG 288
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 275 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGTCGAAAGGGCGCTCAAGATTCA 334
Query 289 AAGAAGGCGAAGCTATACTGTAGAATTGGGAAGGAGGTTGTATCTGCTGTCAAAAAAGGG 348
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 335 AAGAAGGCGAAGCTATACTGTAGAATTGGCAAGGAGGTTGTATCTGCTGTCAAGAAAGGG 394
Query 349 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 454
Query 409 GATGTACCCAAGGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 468
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GATGTACCGAAAGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 514
Query 469 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTATGGTGGGGTTAGTATGGTAGTCGAG 528
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 515 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTACGGTGGTGTTAGTATGGTAGTCGAG 574
Query 529 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 634
Query 589 GGAGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAGACGAGTTAGGGTAGTG 648
|| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 635 GGGGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAAAAGAGTTAGGGTAGTG 694
Query 649 AATATAAAGGTCACTGAAGCTGACAAAGATCAGCTCCTTAATATTGCTTTAGATGCTGGA 708
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 695 AATATAAAGGTCACCGAAGCTGACAAAGATCAGCTCCTTATTATTGCTTTAGATGCTGGA 754
Query 709 GCAGAGGATGTTATTGAGCCCCCAACTTATGAAGATGATACTGATGAAGATAGGGAAGAA 768
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 755 GCAGAGGATGTTATTGAACCCCCAACTTATGAAGATGATACTGATGAAGACAGGGAAGAG 814
Query 769 AGGTACTACAAAATTGTAACTTCTTCTGAGAACTACTCAACGATATTATCAAAGCTACGG 828
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 815 AGGTACTACAAAATTGTAACTTCTAATGAGAACTACTCAACAATATTATCAAAGCTACGT 874
Query 829 GATGAAGGTGTGAATTTCGAGCCTGACAACGGCTCTGAACTGCTCCCTCTTACTACAGTT 888
|||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 875 GATGAAGGAGTGAACTTCGAGCCTGACAATGGCTCTGAACTGCTCCCTCTGACTACAGTT 934
Query 889 GAGGTGGATGATGAGGCCATGGAACTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 948
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 935 GAGGTGGATGATGAGGCCATGGAATTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 994
Query 949 GATGACGTTGATGCTGTTTATATCGACCAAAAATGA 984
||||| ||||||||||||||||||||||||||||||
Sbjct 995 GATGATGTTGATGCTGTTTATATCGACCAAAAATGA 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5