BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320377
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:1102... 3639 0.0
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4... 1853 0.0
> AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11025884-11030708
REVERSE LENGTH=2910
Length=2910
Score = 3639 bits (1970), Expect = 0.0
Identities = 2212/2330 (95%), Gaps = 12/2330 (1%)
Strand=Plus/Plus
Query 10 AGTACTCAACAACGCACGGACGATGGCTCTTCTCCACCGGTGGTAAAAG---CTCTTAAG 66
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||
Sbjct 275 AGTACTCAACAACGCACGGACGATGACTCTTCTCAACC---GGTAAAAGCTTCTCTTAAG 331
Query 67 ACCTATGGAATCACGAAGCCACTTTCTATTGCTGGTCCTTGTGCCGCTGATGTTAAGCGT 126
| |||||| |||||| ||||||| ||||||||||| |||| ||| |||||||||||||||
Sbjct 332 AGCTATGGGATCACGGAGCCACTGTCTATTGCTGGACCTTCTGCTGCTGATGTTAAGCGT 391
Query 127 AATTTGGAACTAGAGAAGTTTCTGGTTGATGAGGGGCTCTATGAGAGCAAGGAAGAAACT 186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 392 AATTTGGAACTAGAGAAGTTTCTGGTTGATGAGGGGCTCTACGAGAGCAAGGAAGAAACT 451
Query 187 ATGCGGAGAGAGGAAGTTCTGGTGCGCATTGATCAGATTGTAAAACACTGGGTGAAACAG 246
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 452 ATGCGGAGAGAGGAAGTTGTGGTTCGCATTGATCAGATTGTAAAACACTGGGTGAAACAG 511
Query 247 TTAACTCGTCAGAGGGGCTATACAGATCAGATGGTGGACGATGCAAATGCCGTCATTTTC 306
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 512 TTAACTCGTCAGAGGGGCTATACTGATCAGATGGTGGAGGATGCAAATGCTGTCATTTTC 571
Query 307 ACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTAGGGCTGATATTGATACTTTGTGT 366
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 572 ACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTATGGCTGATATTGATACTTTGTGT 631
Query 367 GTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTATCTTGCGTGATATGTTG 426
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 632 GTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTTTCTTCCGTGATATATTG 691
Query 427 GCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCCAGTCATG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCCAGTCATG 751
Query 487 AAATTTAAGTTCCAAGGAATATTGATTGATCTTCTGTATGCTAGCATATCGCTTCTAGTT 546
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 752 AAATTTAAGTTCCAAGGAATATCAATTGATCTTCTGTATGCTAGCATATCGCTTCTAGTT 811
Query 547 ATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGAACAAACT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGAACAAACT 871
Query 607 GTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTCGTTCCAAATTCC 666
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 872 GTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTTGTTCCAAATTCC 931
Query 667 GAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTCTAT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTCTAT 991
Query 727 TCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACGGCTGTGC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 992 TCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACGCCTTTGC 1051
Query 787 CAGCTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTTAGGGTATATATA 846
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1052 CAGTTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTTAGAGTATATACA 1111
Query 847 CAATGGCGCTGGCCAAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGAGCTTAGCTTT 906
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1112 CAATGGCGCTGGCCGAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGACCTTAGCTTT 1171
Query 907 CCAGTCTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAATAATAACT 966
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CCTGTTTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAATAATAACT 1231
Query 967 CCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACACTTCGTGTTATG 1026
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1232 CCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGTGTTATG 1291
Query 1027 ACAGAGCAATTCCAGTTTGGCAACACGATCTGTCAGGAGATTGAGCTAAATAAAAAACAC 1086
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1292 ACAGAGCAATTCCAGTTTGGCAACACGATCTGTCAGGAGATTGAGTTAAATAAACAACAC 1351
Query 1087 TGGAGTTCCTTATTTGAGCAATATATGTTCTTTGAGGCATATAAAAACTACCTTCAGGTT 1146
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1352 TGGAGTTCCTTATTTCAGCAATATATGTTCTTCGAGGCATATAAAAACTACCTTCAGGTT 1411
Query 1147 GATGTACTAGCATT-AGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTGGAGTCACG 1205
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GATGTACTAGC-TGCAGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTGGAGTCACG 1470
Query 1206 GTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATGTGCCACCC 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 GTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATGTGCCACCC 1530
Query 1266 TCAACCAAATGAGTATGTAGACACTTCAAAGCAGTTTCAACATTGTGCCTTTTTCATGGG 1325
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1531 TCAACCAAACGAGTATGTAGACACTTCGAAGCAGTTTCGACATTGTGCCTTTTTCATGGG 1590
Query 1326 CTTGCAGAGGGCAGAAGGATTTGGTGGCCAAGAATGTCAACAGTTTGATATACGTGGAAC 1385
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CTTGCAGAGGGCAGATGGATTTGGTGGCCAAGAATGTCAACAGTTTGATATACGTGGAAC 1650
Query 1386 AGTGGACGAGTTCAGGCAAGATGTAAACATGTATATGTTTTGGAGACCTGGGATGGATGT 1445
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1651 AGTGGACGAATTCAGGCAAGAGGTAAACATGTATATGTTTTGGAGACCTGGGATGGATGT 1710
Query 1446 GTATGTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTTTTCCAAATGGATATAA 1505
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GCATGTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTTTTCCAAATGGATATAA 1770
Query 1506 AAGGCCTCGGCAGTCAAGGCACCAGAATCAACAATGCAGAGAACCTGGTGAGG-GGGTCG 1564
|||| ||||||| ||||||||||||| |||||||||||||||||||||||| | ||| ||
Sbjct 1771 AAGGTCTCGGCAATCAAGGCACCAGAGTCAACAATGCAGAGAACCTGGTGATGAGGG-CG 1829
Query 1565 TTGCTTCTTTGTCCAACTCTGTTGATG-GATATGCGAAGAGAAAGAATGATAATGAAATT 1623
||| |||||| ||| |||||||||| | ||||||||||||||||||| ||| ||||||||
Sbjct 1830 TTGGTTCTTTATCCGACTCTGTTGA-GAGATATGCGAAGAGAAAGAACGATGATGAAATT 1888
Query 1624 ATGGATACCCGGCCAGAGAAACGTGAGAAGCGTGCATCTCGTAGTCCACATAGTCTGGAT 1683
||| || || |||||||||||||||||||||| |||||| |||||| ||||| |||||||
Sbjct 1889 ATGAATTCCAGGCCAGAGAAACGTGAGAAGCGCGCATCTTGTAGTCTACATACTCTGGAT 1948
Query 1684 GCAGTTTCTCCTGACAGCAGTGGTATCACTACTGGTGAGACTCCTCAGATTGGCATTGCG 1743
|||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1949 GCAGCTTCTCCTGACAGCAGTGGTATCACTACTAGTGGGACTCCTCAGATTGGCATTGTT 2008
Query 1744 CCAGGTCCTAGATCTGAATGCTTGGTTACTGGTGATCTTGTTTGCAATGTTAGAAGTCTT 1803
|||||||||||| |||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 2009 CCAGGTCCTAGAGCTGAATGCTTAGTAACTGGTGATCTTGTTTGCAATGTTACAAGTCTT 2068
Query 1804 CCTAACGTGGAAGTCGAGGCTGAAAAATTTATCAGTAAAAGCACAGAACTCATAAAATTT 1863
|||||||||||||| ||||||||||| ||||||||||||| ||| ||||| | ||||||
Sbjct 2069 CCTAACGTGGAAGTTGAGGCTGAAAAGTTTATCAGTAAAATCACGGAACTAAGAAAATTC 2128
Query 1864 TCTCAATACGAGCATAACTCCGGTTGCGAGCAAATCCTGGAAGTAGATAGTAGGGCTCTA 1923
||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2129 TCTCAGTACGAGCATACCTCTGGTAGCGAGCAAATCCTGGAAGTAGATAGTAGGGCTCTA 2188
Query 1924 GTTCAAGGTTATCATGGTCTGGCTGAGCCTGTAGGAAAACATGTGAGACCTGACCCTCGT 1983
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct 2189 GTTCAAAGTTATCATGACCTGGCTGAGCCTGTAGCAAAACATGTGAGACCTGACCTTAGT 2248
Query 1984 GCTGTGCTAGCATGTGAAGGTTGGCAGAATAAAGAAATAGGTCGTGATATGGGCTCTGAA 2043
||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 2249 GCTTTGCTAGCGTGTGAAGGTGGGCAGAATAAAGAAATAGGTCATGATATGGGCTCTGAA 2308
Query 2044 TCTATTAATGACACTGCCACACAACATCTTCCAAGGCGACTTAATGTAAAAGAAGATGTT 2103
|||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 2309 TCTATTAATGACACTGACACGCAACATCTTCCAAGGCGACTAAATGTAAATGAAGATGTT 2368
Query 2104 GATGAAGTTGAGAGGGAAGCCAAGTCGGGAGAAATTGCTGATAGTGTTTTGTGGAATGGA 2163
||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 2369 GATGAAGTTGAGAGGGAAGCCAAGTTGGGAGAAATTGCTGGTGGTGTTTTGTGGAATGGA 2428
Query 2164 TACTGTGGGCGGAACCTTGATCATGAGGGTTTTTTGACTCCTGCAAATTTGGATTCAGCT 2223
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2429 CACTGTGGGCGGAACCTTGACCATGAGGGTTTTGTGACTCCTGCAAATTTGGATTCAGCT 2488
Query 2224 GTGGAACATAGAAACTTGCATGCAGACAGATTGTTCAAAAGTGGCTTGTCAGAAGAACTT 2283
|||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 2489 GTGGAAAATAGAAACTTGCATTCAGACGGATTGTTCAAAAGTGGCTTGCCAGAAGAACTT 2548
Query 2284 CAGTCAAATCCTTTGCTCAGCGGGATGGGGAAGCTGGACGATGGAGCTAG 2333
||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2549 CAGTCAAATTCTTTGCTCAGCGGGACGGGGAAGCTGGACGATGGAGCTAG 2598
Score = 58.4 bits (31), Expect = 3e-07
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 2331 TAGCAGCAGGAGGTTGAGCTTGAAGTCCATAGTGTGA 2367
|||||||||||||||||||||||||||| ||| ||||
Sbjct 2710 TAGCAGCAGGAGGTTGAGCTTGAAGTCCGTAGCGTGA 2746
> AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15849772-15854460
FORWARD LENGTH=2677
Length=2677
Score = 1853 bits (1003), Expect = 0.0
Identities = 1465/1688 (87%), Gaps = 31/1688 (2%)
Strand=Plus/Plus
Query 59 CTCTTAAGACCTATGGAATCACGAAGCCACTTTCTATTGCTGGTCCTTGTGCCGCTGATG 118
||| ||| | ||||||||| |||||||| || ||| ||||||| |||| | | || |||
Sbjct 412 CTCCTAAAAGCTATGGAATTACGAAGCCGCTCTCTCTTGCTGGGCCTTCTTCGGCGGATA 471
Query 119 TTAAGCGTAATTTGGAACTAGAGAAGTTTC-TGGTTGATGAGGGGCTCTATGAGAGCAAG 177
||||||||||| |||| || |||||| | | ||||||||||||| ||||| |||||||||
Sbjct 472 TTAAGCGTAATGTGGAGCTGGAGAAG-TACTTGGTTGATGAGGGACTCTACGAGAGCAAG 530
Query 178 GAAGAAACTATGCGGAGAGAGGAAGTTCT-GGTGCGCATTGATCAGATTGTAAAACACTG 236
|| || || |||||| ||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 531 GATGATACCATGCGGCGAGAGGAAGTTCTAGG-ACGCATCGATCAGATTGTAAAGCACTG 589
Query 237 GGTGAAACAGTTAACTC-GTCAGAGGGGCTATACAGATCAGATGGTGGACGATGCAAATG 295
||||||||||||||| | | || || || ||||| |||||||||||||| ||||||||||
Sbjct 590 GGTGAAACAGTTAACGCAG-CAAAGAGGATATACTGATCAGATGGTGGAAGATGCAAATG 648
Query 296 CCGTCATTTTCACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTAGGGCTGATATTG 355
| ||||||||||| |||||||| ||||| ||||| || || || ||| ||||||| ||||
Sbjct 649 CTGTCATTTTCACCTTTGGATCCTACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTG 708
Query 356 ATACTTTGTGTGTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTATCTTGC 415
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 709 ATACTTTGTGTGTTGGGCCATCTTATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGC 768
Query 416 GTGATATGTTGGCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATG 475
|||||| |||||||| ||||||||||||||||| || || |||||| | ||||||||||
Sbjct 769 ATGATATATTGGCTGAGATGGAAGAAGTGACTGAGCTCCATCCTGTTCCCGATGCCCATG 828
Query 476 TCCCAGTCATGAAATTTAAGTTCCAAGGAATATTGATTGATCTTCTGTATGCTAGCATAT 535
| || ||||||||||||||||| ||||||||| ||||||||| || |||||||||||||
Sbjct 829 TTCCGGTCATGAAATTTAAGTTTCAAGGAATACCGATTGATCTGCTCTATGCTAGCATAT 888
Query 536 CGCTTCTAGTTATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGG 595
| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 889 CACTTTTAGTTGTGCCACAGGATCTGGATATCTCCAGCTCTTCTGTGCTGTGTGAAGTTG 948
Query 596 ATGAACAAACTGTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTCG 655
|||| | ||| || || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 949 ATGAGCCAACCGTTCGAAGTCTTAATGGTTGTAGAGTTGCTGATCAGATTCTTAAACTCG 1008
Query 656 TTCCAAATTCCGAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGC 715
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1009 TTCCAAATTTTGAGCACTTCCGGACAACCTTAAGATGCCTGAAGTACTGGGCTAAGAAGC 1068
Query 716 GTGGGGTCTATTCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTG 775
||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 1069 GTGGGGTGTATTCAAATGTGACTGGATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTG 1128
Query 776 CACG-GCTGTGCCAGCTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTT 834
| || | | |||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 1129 CTCGTG-TCTGCCAGCTTTATCCAAATGCAATTCCTAGTATGCTGGTTTCTCGTTTTTTT 1187
Query 835 AGGGTATATA-TACAATGGCGCTGGCCAAATCCAGTCATGCTTTGTGCAATAGAAGAAGA 893
|| ||||||| | |||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 1188 AGAGTATATACT-CAATGGCGGTGGCCGAACCCAGTCATGCTTTGTGCAATAGAAGAGGA 1246
Query 894 TGAGCTTAGCTTTCCAGTCTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTAT 953
||||||| | ||||| |||||||||| || || |||||||| ||||||||||| |||||
Sbjct 1247 TGAGCTTGGATTTCCTGTCTGGGACCGTCGTAAGAATCATCGCGACCGCTATCACCTTAT 1306
Query 954 GCCAATAATAACTCCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCAC 1013
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GCCAATAATAACTCCAGCTTACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCAC 1366
Query 1014 ACTTCGTGTTATGACAGAGCAATTCCAGTTTGGCAACACGATCT-GTCAGGAGATTGAGC 1072
||||| |||||||||||||| ||||||||||| |||| |||| | |||||||||||
Sbjct 1367 TCTTCGCGTTATGACAGAGCAGTTCCAGTTTGGTAACAATATCTTG-CAGGAGATTGAAT 1425
Query 1073 TAAATAAAAAACACTGGAGTTCCTTATTTGAGCAATATATGTTCTTT-GAGGCATATAAA 1131
|||||||| | |||||||| || |||||||| ||||||||||| ||| |||||||| |||
Sbjct 1426 TAAATAAACAGCACTGGAGCTCTTTATTTGAACAATATATGTT-TTTCGAGGCATACAAA 1484
Query 1132 AACTACCTTCAGGTTGATGTACTAGCATTAGATGCCGAAGATTTATTGGCATGGAAAGGT 1191
|||||||||||||||||| || | ||| |||||| |||||||||||||| ||||| |||
Sbjct 1485 AACTACCTTCAGGTTGATATAGTGGCAGCAGATGCAGAAGATTTATTGGCTTGGAAGGGT 1544
Query 1192 TGGGTGGAGTCACGGTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATG 1251
||||||||||| |||||||| || |||||||| ||||||||| ||||||| |||||||||
Sbjct 1545 TGGGTGGAGTCGCGGTTCAGACAGCTGACCTTAAAGATAGAAAGAGACACTAATGGGATG 1604
Query 1252 TTAATGTGCCA-CCCTCAACCAAATGAGTATGTAGACACTTCAAAGCAGTTTCAACATTG 1310
||||||||||| ||| ||||||||||||||||||||||| | | |||||||| |||||
Sbjct 1605 TTAATGTGCCATCCC-CAACCAAATGAGTATGTAGACACGGCTAGGCAGTTTCTGCATTG 1663
Query 1311 TGCCTTTTTCATGGGCTTGCAGAGGGCAGAAGGATTTGGTGGCCAAGAATGTCAACAGTT 1370
|||||||||||||||||||||||||||||| ||| |||| || |||||||||||||||||
Sbjct 1664 TGCCTTTTTCATGGGCTTGCAGAGGGCAGAGGGAGTTGGGGGTCAAGAATGTCAACAGTT 1723
Query 1371 TGATATACGTGGAACAGTGGACGAGTTCAGGCAAGATGTAAACATGTATATGTTTTGGAG 1430
|||||||||||| || || || |||||||| ||||| ||||||||||||||||||||||
Sbjct 1724 TGATATACGTGGTACTGTCGATGAGTTCAGACAAGAAGTAAACATGTATATGTTTTGGAA 1783
Query 1431 ACCTGGGATGGATGTGTAT-GTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTT 1489
||||||||||||||| | | |||||||||||||| ||||| ||||||||| |||||||||
Sbjct 1784 ACCTGGGATGGATGTTT-TCGTTTCTCATGTTCGTAGACGACAGCTTCCACCTTTTGTTT 1842
Query 1490 TTCCAAATGGATATAAAAGGCCTCGGCAGTCAAGGCACCAGAATCAACAATGCAGAGAAC 1549
| || ||||||||| ||||||||||||||| |||||||| |||| || | || ||
Sbjct 1843 TCCCTAATGGATATCGAAGGCCTCGGCAGTCCAGGCACCAAAATCTACCGGGTGGAAAAT 1902
Query 1550 CTGGTGAGGG-GGTC-GTTGCTTCTT-TGTCCAACTCTGTTGATGGATATGC--G--AAG 1602
||||||| | || | || | |||| | ||| |||||| | |||| | || | |||
Sbjct 1903 CTGGTGAAGATGG-CAGT-GTTTCTCAT-TCCGGCTCTGTGG-TGGAGAGGCATGCCAAG 1958
Query 1603 AGAAAGAATGATAATGAAATTATGGATACCCGGCCAGAGAAACGTGAGAAGCGTGCATCT 1662
||||||| |||| |||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1959 CGAAAGAACGATAGTGAAATGATGGATGTGAGGCCAGAGAAACCTGAGAAGCGTGCATCT 2018
Query 1663 CGTAGTCCACATAGTCTGGATGCAGTTTCTCCTGACAGCAGTGGTATCACTACTGGT-GA 1721
| ||||||||| ||||| ||| |||||||||||| | |||| |||||| |||||| |
Sbjct 2019 CTTAGTCCACAGAGTCTAGATATAGTTTCTCCTGAAAATAGTGCTATCACAACTGGTTG- 2077
Query 1722 GACTCCTC 1729
||||||||
Sbjct 2078 GACTCCTC 2085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5