BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320379
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652... 1358 0.0
AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453... 833 0.0
> AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652-11036910
REVERSE LENGTH=1185
Length=1185
Score = 1358 bits (735), Expect = 0.0
Identities = 826/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGGGGATTTCTACAGAGACGCAGCAAAACGCGGTTTCAGAGGCTGCACAAAAGAGATGG 60
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 84 ATGGGGATTTCTACAGAGACGCAGCAAATTGCGGCTTCAGAGGCTGCACAAAAGAGATGG 143
Query 61 ACTACAAGCGATTTCGACATTGGAAAGCCTCTTGGTAGAGGGAAGTTTGGCCATGTTTAT 120
||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 144 ACTACAAGCGATTTCGATATCGGAAAGCCACTTGGTAGAGGAAAGTTTGGCCATGTTTAT 203
Query 121 CTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTT-AAGGTTCTTTTTAAGACTCA 179
||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||
Sbjct 204 CTAGCAAGAGAGAAACGGAGCGATCACATTGTGGCT-TTAAAGGTTCTTTTTAAGGCTCA 262
Query 180 GCTTCAACAATCTCAAGTTGAACACCAGCTT-CGGCGGGAAGTAGAAATTCAATCTCATC 238
|||||||||||||||||||||||||||| || || |||||||||| |||||||||||||
Sbjct 263 GCTTCAACAATCTCAAGTTGAACACCAG-TTACGAAGGGAAGTAGAGATTCAATCTCATC 321
Query 239 TTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTTTATGATCAGAAAAGAGTTTATT 298
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 322 TTCGGCATCCCAATATTCTGCGGCTCTACGGTTACTTCTATGATCAGAAAAGAGTTTATT 381
Query 299 TGATTTTAGAGTATGCAGCT-AGAGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 357
||||||| |||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct 382 TGATTTTGGAGTATGCTG-TAAGGGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 440
Query 358 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCAAGAGCCCTCATCTATTGC 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCTAGAGCCCTCATCTATTGC 500
Query 418 CATGGAAAGCATGTAATTCACAGAGATATAAAGCCTGAAAATCTATTGATTGGTGCTCAG 477
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 501 CATGGAAAGCATGTAATTCACAGAGATATAAAACCTGAAAATCTGTTGATTGGTGCTCAG 560
Query 478 GGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACACATTCAACCGCAGAAGGACT 537
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 561 GGTGAGCTCAAGATTGCAGATTTTGGATGGTCAGTACACACATTCAACCGTAGAAGGACT 620
Query 538 ATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTGGAAAGCGTAGAACACGATGCA 597
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 621 ATGTGTGGCACTTTGGATTACCTTCCACCTGAGATGGTGGAAAGCGTTGAACATGATGCG 680
Query 598 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTCCCTCCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 681 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTTCCTCCT 740
Query 658 TTTGAGGCCAGGGAACATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 800
Query 718 CCTCCCAAACCCATTGTCTCTTCATATGCAAAGGACCTGATTAGCCAGATGCTGGTTAAG 777
||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||
Sbjct 801 CCTCCCAAACCCATTGTGTCATCATCTGCAAAGGACCTGATTAGCCAGATGTTGGTTAAG 860
Query 778 GAGTCTACACGACGTTTGCCCTTGCACAAGCTTCTTGAACACCCATGGATTGTGCAAAAC 837
|||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 861 GAGTCTACGCAACGTTTGGCCTTGCACAAGCTTCTTGAACACCCGTGGATTGTGCAAAAC 920
Query 838 GCAGACCCATCAGGCCTCTACAGAGGTTGA 867
||||||||||||||||| |||||||| |||
Sbjct 921 GCAGACCCATCAGGCCTTTACAGAGGATGA 950
> AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453-15844536
FORWARD LENGTH=1171
Length=1171
Score = 833 bits (451), Expect = 0.0
Identities = 702/825 (85%), Gaps = 10/825 (1%)
Strand=Plus/Plus
Query 43 GCTGCACAAAAGAGATGGACTACAAGCGATTTCGACATTGGAAAGCCTCTTGGTAGAGGG 102
||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||
Sbjct 165 GCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCCTCTTGGCAGAGGC 224
Query 103 AAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTTAAG 162
|| || || || || ||||| || ||||| ||||||||||||||| |||| ||||| |||
Sbjct 225 AAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGTTGTCGCTCTAAAG 284
Query 163 GTTCTTTTTAAGA-CTCAGCTTCAACAATCTCAAGTTGAACACCAGCTTC-GGCGGGAAG 220
|||||||| |||| | |||||||||||||| ||||||||||| |||| || | | ||||
Sbjct 285 GTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGC-TCAGAAGAGAAG 342
Query 221 TAGAAATTCAATCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTT-TAT 279
| || ||||| ||||||||||| || ||||| || || || || || || || ||| |||
Sbjct 343 TTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGGCTA-TTTCTAT 401
Query 280 GATCAGAAAAGAGTTTATTTGAT-TTTAGAGTATGCAGCTAGAGGTGAGCTTTATAAAGA 338
||||| ||||||||||||||||| || |||||||| |||||||| || ||||| || ||
Sbjct 402 GATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCTAGAGGCGAACTTTACAAGGA 460
Query 339 GCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGC 398
|||||||| ||||| |||||||||||| | ||||| || ||||||||||| ||||||||
Sbjct 461 TCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGCCTCATTGGC 520
Query 399 AAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATA-TAAAGCCTGAAA 457
|| || ||||||||||||||||| |||||||| || |||||||||| |||| || || |
Sbjct 521 GAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAAA-CCAGAGA 579
Query 458 ATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACA 517
|||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 580 ATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTCGGTACACA 639
Query 518 CATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTGG 577
|||| ||||| |||||||| ||||||||||| | ||||||||||| ||||||||||| |
Sbjct 640 CATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGAGATGGTCG 699
Query 578 AAAGCGTAGAACACGATGCAAGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAAT 637
||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| |
Sbjct 700 AAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTGTTACGAGT 759
Query 638 TTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAACATTCAGAGACATACAAAAGGATTG 697
||||||||||||| ||||||||||| |||| ||| || ||||| ||||||| ||||||||
Sbjct 760 TTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAGAAGGATTG 819
Query 698 TTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTCTCTTCATATGCAAAGGACCTGA 757
| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||| || |
Sbjct 820 TGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAAGGATCTTA 879
Query 758 TTAGCCAGATGCTGGTTAAGGAGTCTACACGACGTTTGCCCTTGCACAAGCTTCTTGAAC 817
||||||||||||| || ||||||||| | | |||| |||| |||||||||||||| || |
Sbjct 880 TTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTGCCATTGCACAAGCTTCTGGAGC 939
Query 818 ACCCATGGATTGTGCAAAACGCAGACCCATCAGGCCTCTACAGAG 862
| || ||||| ||||||||||| || || || || |||||||||
Sbjct 940 ATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5