BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320410
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29273.1 | Symbols: LCR23 | low-molecular-weight cysteine-ri... 333 4e-91
AT4G29280.1 | Symbols: LCR22 | low-molecular-weight cysteine-ri... 156 1e-37
> AT4G29273.1 | Symbols: LCR23 | low-molecular-weight cysteine-rich
23 | chr4:14425441-14425813 REVERSE LENGTH=234
Length=234
Score = 333 bits (180), Expect = 4e-91
Identities = 216/234 (92%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAACATATCATGTTCTCATTTCCTCATACTCATGCTTGTGTTATCAGTGGTTGAG 60
||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||| ||
Sbjct 1 ATGGCCAACATATCATGGTCTCATTTTCTTATACTCATGCTTGTGTTCTCAGTGGTTAAG 60
Query 61 AAGGCTAAGGGATATCAAACTGATAAATATTGTACTATAATCCTTGATCCAAGAACTCCA 120
|||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 61 AAGGGTAAGGGAGATCAGACTGATAAGTATTGTACTATAATCATTGATCCAAGAACTCCA 120
Query 121 TGTGATCTTGTTGACTGTCGTCTAAACTGCTATTCGGGGTACAATGGAGTTGGAAAATGT 180
||||| |||||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||
Sbjct 121 TGTGACCTTGTTGATTGTCGCCTAAGCTGCTATACGGGGTACAATGGAGTTGGGAAATGT 180
Query 181 ATTGCATCCAAAGCCGGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTTAA 234
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGCATCCAAAGCTAGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTTAA 234
> AT4G29280.1 | Symbols: LCR22 | low-molecular-weight cysteine-rich
22 | chr4:14427901-14428265 REVERSE LENGTH=234
Length=234
Score = 156 bits (84), Expect = 1e-37
Identities = 192/242 (79%), Gaps = 16/242 (7%)
Strand=Plus/Plus
Query 1 ATGGCCAACATATCATGTTC-TCATTTCCTCATACTCATGCTTGTGTTATCAG-TGGTTG 58
||||| || ||||||||||| || |||| || |||||||||| ||||| |||| | ||
Sbjct 1 ATGGCTAAGATATCATGTTCTTC-TTTCTTCGTACTCATGCTAGTGTTTTCAGTTTTTTC 59
Query 59 AGAAGGCT-A-AGGGATATCAAACTGATAAATATTGTACTATAATCCTTGATCCAAGAAC 116
| || | | | || || || ||| || |||||| |||||| || ||||| || |
Sbjct 60 A-TTGGTTGAGAAGGCTA--AAGGAGATGAACGTTGTACCATAATCATTCATCCAGGATC 116
Query 117 TCCATGTGA-TCTTGTTGACTGTCG-TCTA-AACTGCTATTCGGGGTACAATGGAGTTGG 173
||||||||| ||| ||| ||| | || | |||||||| ||| |||||||||||||||
Sbjct 117 TCCATGTGACCCTT-CTGATTGT-GTTC-AGTACTGCTATGCGGAGTACAATGGAGTTGG 173
Query 174 AAAATGTATTGCATCCAAAGCC-GGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTT 232
||||||||||||||||||| || ||||||| | |||||||| ||||||||||||||||||
Sbjct 174 AAAATGTATTGCATCCAAA-CCTGGTAGAAGTGCTAATTGTATGTGTACTTATAATTGTT 232
Query 233 AA 234
||
Sbjct 233 AA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5